RnoEX0037481 @ rn6
Exon Skipping
Gene
ENSRNOG00000000007 | Gad1
Description
glutamate decarboxylase 1 [Source:RGD Symbol;Acc:2652]
Coordinates
chr3:56878093-56885206:+
Coord C1 exon
chr3:56878093-56878183
Coord A exon
chr3:56883645-56883730
Coord C2 exon
chr3:56885094-56885206
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTCTTCCTTTATCAGGCC
3' ss Score
10.76
5' ss Seq
ATGGTAACT
5' ss Score
6.06
Exon sequences
Seq C1 exon
GTCACCCTCGGTTTTTCAACCAGCTCTCTACTGGTTTGGATATCATTGGTTTAGCTGGCGAATGGCTGACATCAACTGCCAATACCAATAT
Seq A exon
GCCATCAGACATGAGGGAGTGTTGGTTGCTACGGTGATGGGGCTCAGAGCAGGACCAAAGCATGAGTGTGGCCTCCAGAGGTGATG
Seq C2 exon
GTTCACATATGAAATTGCACCCGTGTTTGTTCTTATGGAACAGATTACACTTAAGAAGATGCGAGAGATCATTGGATGGTCAAATAAAGATGGTGATGGGATATTTTCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000007_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(15.5=100)
A:
PF0028214=Pyridoxal_deC=PD(7.9=46.2)
C2:
PF0028214=Pyridoxal_deC=FE(10.1=100)
Main Inclusion Isoform:
ENSRNOT00000000008fB5815
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGCTCTCTACTGGTTTGGA
R:
TCCCATCACCATCTTTATTTGACCA
Band lengths:
174-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]