MmuEX0019930 @ mm10
Exon Skipping
Gene
ENSMUSG00000070880 | Gad1
Description
glutamate decarboxylase 1 [Source:MGI Symbol;Acc:MGI:95632]
Coordinates
chr2:70579111-70585946:+
Coord C1 exon
chr2:70579111-70579201
Coord A exon
chr2:70584420-70584505
Coord C2 exon
chr2:70585834-70585946
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTCTTCCTTTATCAGGCC
3' ss Score
10.76
5' ss Seq
ATGGTAACT
5' ss Score
6.06
Exon sequences
Seq C1 exon
GTCACCCTCGATTTTTCAACCAGCTCTCTACTGGTTTGGATATCATTGGTTTAGCTGGTGAATGGCTGACATCGACTGCCAATACCAATAT
Seq A exon
GCCATCAGACATGAGGGAGTGTTGGTTGCTACGGTGATGGGGCTCAGAGCAGAACCAAAGCATGAGTGTGACCTCCAGAGGTGATG
Seq C2 exon
GTTCACATATGAAATTGCACCCGTGTTTGTTCTCATGGAACAGATTACTCTTAAGAAGATGAGAGAGATCGTTGGATGGTCAAATAAAGATGGTGATGGGATATTTTCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070880_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(39.5=100)
A:
PF0028214=Pyridoxal_deC=PD(7.9=46.2)
C2:
PF0028214=Pyridoxal_deC=PD(34.6=94.9)
Main Inclusion Isoform:
ENSMUST00000094934fB1748
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCGATTTTTCAACCAGCT
R:
TGACCATCCAACGATCTCTCTCA
Band lengths:
170-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types