MmuINT0052866 @ mm9
Intron Retention
Gene
ENSMUSG00000026810 | Dpm2
Description
dolichol-phosphate (beta-D) mannosyltransferase 2 [Source:MGI Symbol;Acc:MGI:1330238]
Coordinates
chr2:32426726-32427919:+
Coord C1 exon
chr2:32426726-32426815
Coord A exon
chr2:32426816-32427816
Coord C2 exon
chr2:32427817-32427919
Length
1001 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
GCTCTTGCCCTTGGTGCCAGCCA
3' ss Score
3.19
Exon sequences
Seq C1 exon
GCCACCGGGACAGACCAAGCAGTAGGATTTGGCCTTGTCGCCGTTAGCTTGATCATCTTCACCTACTACACCACTTGGGTGATTCTCTTG
Seq A exon
GTATGTGTGCCCCACCCCCACCCCGCTCACCTTCATTTTGCTCTGGATCTCTAAGCCAGTTTCCTAACGCGACTTAATCAGCGTCTGTGTGCCAGCGTCTGGATGTTTAGCTAGCTCTAATCTCACGAAATCTACACTATGGTGCTTGCAGATGGTGTCTACATTTTATAGATGAGGAGGCTAAGACTCGGGGAGAAGGCTGTTTCTCAGCCTCTGAACTGCCGCACAGTGAGGCTTTATTTTGTGTTTGTCCTCCTGGTTAGCCAGCAGGTTCCTGGGTGTAGCAGTCGCCGGTGGAGTTTATTAACATCTCAAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCTCTCTCTTTAATGTGGGAAATTTTGTTAGTTATTGTTTTAAAGTACACTGTGCTTGGAAAGGGGCATCTTGCAGTACTTGGTATCCTTCAGAGAGGAAAGTTAGGTGGGCTGACCTTCGGTGATGAAGAGAACTGGCTGATTCTCCAGAGGACTGGGGTTCAAGTTCCAGCACCCACATGGCCAGCTACAACCATCTGTAACTCCAGCTCCAGGAGACCCAGCAAAAGTCCCTGGAACGGAACGCCATTGCTGCTTAAGTTGTGTTAGGAGTTAGATTGGAGATCCAGGGCTTGGATGAAAGTACACCTGGACTCACAGGCACAAATGCATGATCAAAAAATAAAGACCTCTTTAAAAGACCTAGAGTTCTCAGAAGGCAGAAGAAGGGGGGAGGGCAGCTTGGTGAGGTCAGCCAGGGCCTCAGAAATCAAAAAGGATGGTTTCCAGCACTCACAAGGCCCAGGCAGTATTCAACAATACAGAGACAATATGGTGGGTCTCTTGTTATGATACATATCCACGCTTGGGGATGCTATCAAGGTGGGCCCTCAGTATCCAGTGCTGCCAGGGGGAGGTGGGACGGCTTCCCTTTGGGGCTGAGTAAGGTGAGCAGTACTCACCAGAGCTCTTGCCCTTGGTGCCAG
Seq C2 exon
CCATTCATTGACAGCCAGCATGTCATCCACAAATACTTCCTGCCCCGCGCCTACGCCGTCCTCCTCCCGTTGGCCGCAGGCCTCCTGCTGCTCCTATTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026810-Dpm2:NM_010073:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072977=DPM2=PU(33.8=90.0),PF085107=PIG-P=PU(32.5=86.7)
A:
NA
C2:
PF072977=DPM2=FE(42.5=100),PF085107=PIG-P=FE(42.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGGACAGACCAAGCAG
R:
CCACAAATAGGAGCAGCAGGA
Band lengths:
190-1191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: