RnoINT0050781 @ rn6
Intron Retention
Gene
ENSRNOG00000049110 | Dpm2
Description
dolichyl-phosphate mannosyltransferase subunit 2, regulatory [Source:RGD Symbol;Acc:2514]
Coordinates
chr3:11587941-11589255:+
Coord C1 exon
chr3:11587941-11588030
Coord A exon
chr3:11588031-11589152
Coord C2 exon
chr3:11589153-11589255
Length
1122 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
GCTCTTGCCCTTGGTACCAGCCA
3' ss Score
3.16
Exon sequences
Seq C1 exon
GCCACCGGGACAGACCAAGCGGTGGGATTTGGCCTTGTCGCCGTTAGCTTGATCATCTTCACCTACTACACCACTTGGGTGATTCTTTTG
Seq A exon
GTATGTGCGCCCCACCCCCATCCCGCTCACCTTCACTCTGCCCTGGATCTCCAAACCCAATTTCCTACAACGATTCGAGTAGCGTCCGTGCGCCAGGCACGGTGCTGAATGATTAGCTTGCTCCAATTTCACAGAATCTACACTCTGATGACTGCTGATGGTGTCTGCATTTTATAGATGAGGAGGCTAAGACTCAGGGGGAAGGATATTTCTCAGCCTCTGAACTGCACAGTAAGGCTTTATTTTGAGTCTGTCCTCCTGGTTAGCCAACAAATTCCTGGGTGAAGCAATCACCAATCAATTTTATTAACACTTCTTCCCACCCCCCCTTTAATGTGGGAAATTTTGTTAGTGGTTGCTTAAAAGTACATTGTGCTTAGAAGGGGGAATCTTGCCATACTTGGTATCCTTCAGAAAGAAAAGTTAGGTGGTCTGAAGAGATAGGTCAGTGGTTAAGAGGACTGGCTGCAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGGTTCGGTCCTCAGCTCTGAAAAAAAAAAAAGAAAGAGGACTGGCTGCTCTTCCAGAAGACAGAGGTTCAAGTCCCAGCACCCACATGGCCAGCTACAACCATCTCTAACTCTAGCTGCAGGATACCCAGCAAAAATGCTTGGCACATCACTGGTGCTTAAATGTTAAGAGTTGGATTGGAGATCCAGGGCTTGGTACACCTGCATTCACATGAATATATGCATAATCAAAAAATAAAAGACTTAGAGTTCCTGGGTTCAGAAAGCAGAGGAAGGTGGGGCTCAGTGAGGTCAACCAGGGCTCTGTGTGAGAAACCCTGCCTCAGAAAACAAAAGAATGCTTTCCGGCACTCAAAAGACTCAGGCAGTATTCAAGGCTACCGAGACAATATAGTGGGTCTCTTGTTACGGTACATATGCACATTCAGAGGAGCCCAGGCTGGGAACGTCTTGGGGATGCTATCAAGGCGGGTCCTCAGTATGCAGTGCTGCCACTGGGCTCAAGCCCCTTGAACCTCTAGAGGGAGGTGGGACGGCTTTCTTTTGGGGCTGGTAAGGTGAGCCGTACTCACCAGAGCTCTTGCCCTTGGTACCAG
Seq C2 exon
CCATTCATTGACAGCCAGCATGTCATCCACAAGTACTTCCTGCCCCGTGCCTACGCTGTCCTCCTCCCATTGGCCGCAGGCCTCCTGCTGCTCCTGTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049110:ENSRNOT00000071505:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072977=DPM2=PU(33.8=90.0),PF085107=PIG-P=PU(32.5=86.7)
A:
NA
C2:
PF072977=DPM2=FE(42.5=100),PF085107=PIG-P=FE(42.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGGGACAGACCAAGC
R:
CACAAACAGGAGCAGCAGGAG
Band lengths:
190-1312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]