GgaINT0126398 @ galGal3
Intron Retention
Gene
ENSGALG00000005066 | DPM2
Description
NA
Coordinates
chr17:5501231-5502464:+
Coord C1 exon
chr17:5501231-5501320
Coord A exon
chr17:5501321-5502361
Coord C2 exon
chr17:5502362-5502464
Length
1041 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGG
5' ss Score
8.6
3' ss Seq
GCCCCGCTCTGTTTCTGCAGCCC
3' ss Score
10.17
Exon sequences
Seq C1 exon
GCCACGGCGACGGACCGGGCGGTAGGGTTCGGCTTGGTGGCCTTCAGCCTCATTCTCTTCGTATACTACACGCTGTGGATCATCGTGCTG
Seq A exon
GTACGGGGCTACGGGGCTCGCGCTGGTTCTTAGGTCCTGGTAAAGTCCAGCCTCCAGATCTTGCTTAGGTGCTGAAGGAGCACACTGTGCTGGCGTCCTGCTGGGAAGTGCTGGGGCAGAGCCTTCTGGCATTGGTGGCACAGCCCTCACCTTCTAGGTGTGCTGGCCCGAACCCGGCTCGGTGAGCTTGGCTTCACTCCCAGTGCTCCTGCACCGCCTGGGGATGGTGGGGGCTGTCAGTGGGAGCCAAACCTGGCCCATGGGTGCTGGTGGGGCCTTGTGCACACCTCCAGAGTTATGGTGCTGGTGGAGGTGACAGATGGAATCATGGAGAGAAATGCTTCTCACTTAGACCAGAGCCCAGCAGGGGGGAGAAGGGTTCAGTAACACCGAGCTCTGGAAAAGTGCGAGTCTGGCAGTGTGACTGCTCCTCAGGATGCAGCAGCTGGGGTCATTAGTGGTGTTCTTCATAGAAATGTCTCCTTGTCAGTTTTCCAGGCAGCAGCTCAGCCTTGGACTTGTATCTGAACTCCTGGCAGTTTCCTTTCTGAGGATCTTGGGTTCCCCTCCTAGATGTGCTCACAGCTGTGGGATAGGTGTTCATACAGCGCAGGAATCATTGCAGTGCACTGTAGCATCCAAAGAATTCTGCTGTGCTCAGCAGAGGAGCCATGACAGGATCAGTGTGAGAGAGAGCCAGCATCAGCCTTTCCTTTCAAGAAGGCAGATGGTTGGGGGGCTGGTGTGCCCAGCACCACACAGCCAAGCCCACCCTGTATCCCAGCACTGCAGGGCCATGGCTGGGCTCCTGCTCTCTCCTTGTCACCCAGCTGAGCACTGGAGTCCTCCTCTTCCCAGCTGTTCTCTGCACCTGTGGTGCTGCTGCATGAGGCTTCACCACGTGCAGGTTCAGACGCTCTTTTATTAGCAATCCCCTTGAGCCCCATGTTTCCGATCTGCTTTTGAAACTCCGGAGCTGCACGTGTTGGTGACTTGCTCTCATGTGTGGCCACCTGCTAATGCCCCGCTCTGTTTCTGCAG
Seq C2 exon
CCCTTCATCGACAGCGACCACAGCATCCACCAATACTTCTTGCCCAGGGAGTATGCAGTTATCATCCCTGTGGTGGCTGGGCTGCTGCTGCTGCTATTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005066:ENSGALT00000008122:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072977=DPM2=PU(33.8=90.0),PF0175811=SBF=PU(37.7=96.7),PF085107=PIG-P=PU(34.2=90.0)
A:
NA
C2:
PF072977=DPM2=FE(42.5=100),PF0175811=SBF=FE(44.2=100),PF085107=PIG-P=FE(43.0=100),PF151021=TMEM154=PU(62.0=88.6),PF046898=S1FA=PU(50.0=54.3)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]