DreINT0059682 @ danRer10
Intron Retention
Gene
ENSDARG00000095623 | dpm2
Description
dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit [Source:ZFIN;Acc:ZDB-GENE-030131-9093]
Coordinates
chr5:31115388-31115706:-
Coord C1 exon
chr5:31115617-31115706
Coord A exon
chr5:31115491-31115616
Coord C2 exon
chr5:31115388-31115490
Length
126 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CTCTTCTGCTCTTATTCCAGCCT
3' ss Score
7.49
Exon sequences
Seq C1 exon
GCAACCGGAGCAGATCAAGCTGTTGGCTTTGGACTCGTTGGCTTTAGTCTTTTGCTGTTCACATATTACTCCATTTGGGTGGTAGTCTTG
Seq A exon
GTAAGTGATCAGTTAAATTCATTTTTACCGGTAGATAAATCATGCACAATGTGTTACTTATTTCCTGTGCTACTAAAACATATGCTGCTAAAAAAAGTGATGGAAACTCTTCTGCTCTTATTCCAG
Seq C2 exon
CCTTTCGTAGACAGTGACCATGTGATACACAGCTATTTTCTTCCACGAGAATATTCAGTCATACTTCCTGGCATCGCAGCATTAATCCTCTTGCTCTTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095623:ENSDART00000131443:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072977=DPM2=PU(34.2=90.0),PF085107=PIG-P=PU(33.8=86.7)
A:
NA
C2:
PF072977=DPM2=FE(43.0=100),PF085107=PIG-P=FE(44.2=100),PF055456=FixQ=PU(48.6=48.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCGGAGCAGATCAAGCTG
R:
AGAGCAAGAGGATTAATGCTGCG
Band lengths:
186-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]