MmuALTA0014726-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000070953 | Rabepk
Description
Rab9 effector protein with kelch motifs [Source:MGI Symbol;Acc:MGI:2139530]
Coordinates
chr2:34641087-34646175:-
Coord C1 exon
chr2:34646023-34646175
Coord A exon
NA
Coord C2 exon
chr2:34641087-34641245
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTTTCTCTCTGGACTAGAAGACA
3' ss Score
-0.44
Exon sequences
Seq C1 exon
GAACACACCAGTGGGACACGGCCACCAGGGAGGGCCTCTTGCCTCGGTACGAGCATGCCAGCTTCCTTCCCTCCTGCTCTCCTCACAGCATCTGGGTGTTTGGAGGTGCAGACCAGTCAGGAAATCGAAACTGTCTGCAAGTCATGAGTCCTG
Seq A exon
NA
Seq C2 exon
ACAGGACGTGGAGCACACCAGAAGTGACTGGCTCCCCTCCATCCCCAAGAACATTCCACACATCGTCCGCAGCTATCGGAAACCAACTATACGTCTTTGGGGGAGGAGAGAGAGGTGCCCAGCCTGTGGAGGACGTGAAGTTGCATGTATTTGACGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070953-7-8,7-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=NA C2=0.436
Domain overlap (PFAM):
C1:
PF0764610=Kelch_2=PD(20.8=21.2),PF134151=Kelch_3=PU(46.9=44.2)
A:
NA
C2:
PF0764610=Kelch_2=PD(20.8=20.0),PF134181=Kelch_4=PU(70.4=69.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATCTGGGTGTTTGGAGG
R:
CAGTCACTTCTGGTGTGCTCC
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: