MmuEX0006577 @ mm9
Exon Skipping
Gene
ENSMUSG00000027104 | Atf2
Description
activating transcription factor 2 [Source:MGI Symbol;Acc:MGI:109349]
Coordinates
chr2:73701226-73708742:-
Coord C1 exon
chr2:73708680-73708742
Coord A exon
chr2:73702419-73702558
Coord C2 exon
chr2:73701226-73701295
Length
140 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTCTCTGTCTTCTAGTTA
3' ss Score
10.51
5' ss Seq
GAGGTACCT
5' ss Score
7.63
Exon sequences
Seq C1 exon
ATACTGGATTTATGACTTAAAACCTTCCCACAGAGAAAATCCCAGGCTCATATAGCTTCACTG
Seq A exon
TTAATTGGCTAAAGGTGGGCTCAGACTTTATGCAAATGTTAAACTATTTTATGTGAAGTACTTGAACATCTGCAGGTTATCTGTCTGCAAGAGATACTGGAAAAGACCCTCACACCTTAGCTTCTCTGCTGGGAGAAGAG
Seq C2 exon
ATAAAACACGGACCTGTGGAATATGAGTGATGACAAACCCTTTCTATGCACTGCCCCTGGGTGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027104-'6-7,'6-5,7-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.130
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138941=zf-C2H2_4=PU(34.6=56.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGATTTATGACTTAAAACCTTCC
R:
CCCAGGGGCAGTGCATAGAAA
Band lengths:
122-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types