MmuEX0039488 @ mm9
Exon Skipping
Gene
ENSMUSG00000052406 | Rexo4
Description
REX4, RNA exonuclease 4 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2684957]
Coordinates
chr2:26811015-26814087:-
Coord C1 exon
chr2:26813999-26814087
Coord A exon
chr2:26811809-26811883
Coord C2 exon
chr2:26811015-26811089
Length
75 bp
Sequences
Splice sites
3' ss Seq
TACTTGTCATTTTCTTGTAGGTT
3' ss Score
8.73
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
GAGAAGAGTTTGAAGTTGTGAAGAAGGAAGTGGCAGAAATGTTGAAGGGCAGAATCCTGGTGGGGCATGCGCTACACAATGATTTAAAG
Seq A exon
GTTTTGTTCCTTGACCATCCAAAAAAGAAAATCAGGGACACTCAGAAATTCAAACCATTCAGGAGTCGAGTAAAG
Seq C2 exon
AGTGGACGACCGTCTCTGAAACGGCTTTCTGAGAAAATTCTGGGGATCAGGGTCCAACAGGCCGAGCACTGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052406_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.320 C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(31.5=100),PF0092919=RNase_T=PU(14.0=20.0)
A:
PF0092919=RNase_T=FE(15.9=100)
C2:
PF0092919=RNase_T=PD(1.1=4.0),PF0092919=RNase_T=FE(55.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAGTTTGAAGTTGTGAAGAAGG
R:
CAGTGCTCGGCCTGTTGG
Band lengths:
159-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: