HsaEX6063744 @ hg19
Exon Skipping
Gene
ENSG00000148300 | REXO4
Description
REX4, RNA exonuclease 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:12820]
Coordinates
chr9:136272931-136276193:-
Coord C1 exon
chr9:136276105-136276193
Coord A exon
chr9:136273892-136273966
Coord C2 exon
chr9:136272931-136273005
Length
75 bp
Sequences
Splice sites
3' ss Seq
ATTATATTTTATTTTTCTAGGTA
3' ss Score
10.03
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GAGAAGAGCTTGAAGTTGTTCAGAAGGAAGTGGCAGAGATGCTGAAGGGCAGAATTCTAGTGGGGCACGCTCTGCATAATGACCTAAAG
Seq A exon
GTACTATTTCTTGATCATCCAAAAAAGAAGATTCGGGACACACAGAAATATAAACCTTTCAAGAGTCAAGTAAAG
Seq C2 exon
AGTGGAAGGCCGTCTCTGAGACTACTTTCAGAGAAGATCCTTGGGCTCCAGGTCCAGCAGGCGGAGCACTGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148300-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.387 C2=0.008
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(25.4=100)
A:
PF0092919=RNase_T=FE(21.1=100)
C2:
PF0092919=RNase_T=FE(21.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTTGAAGTTGTTCAGAAGGA
R:
GAACAGTGCTCCGCCTGC
Band lengths:
159-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)