HsaEX6063744 @ hg38
Exon Skipping
Gene
ENSG00000148300 | REXO4
Description
REX4 homolog, 3'-5' exonuclease [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr9:133407807-133411073:-
Coord C1 exon
chr9:133410985-133411073
Coord A exon
chr9:133408768-133408842
Coord C2 exon
chr9:133407807-133407881
Length
75 bp
Sequences
Splice sites
3' ss Seq
ATTATATTTTATTTTTCTAGGTA
3' ss Score
10.03
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GAGAAGAGCTTGAAGTTGTTCAGAAGGAAGTGGCAGAGATGCTGAAGGGCAGAATTCTAGTGGGGCACGCTCTGCATAATGACCTAAAG
Seq A exon
GTACTATTTCTTGATCATCCAAAAAAGAAGATTCGGGACACACAGAAATATAAACCTTTCAAGAGTCAAGTAAAG
Seq C2 exon
AGTGGAAGGCCGTCTCTGAGACTACTTTCAGAGAAGATCCTTGGGCTCCAGGTCCAGCAGGCGGAGCACTGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148300_MULTIEX1-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=0.387 C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(25.4=100)
A:
PF0092919=RNase_T=FE(21.1=100)
C2:
PF0092919=RNase_T=FE(21.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTTGAAGTTGTTCAGAAGGA
R:
GAACAGTGCTCCGCCTGC
Band lengths:
159-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains