GgaEX1048975 @ galGal4
Exon Skipping
Gene
ENSGALG00000003166 | REXO4
Description
REX4 homolog, 3'-5' exonuclease [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr17:6902845-6904087:-
Coord C1 exon
chr17:6903999-6904087
Coord A exon
chr17:6903605-6903679
Coord C2 exon
chr17:6902845-6902919
Length
75 bp
Sequences
Splice sites
3' ss Seq
GGAAATACAATTTCTTTCAGGTC
3' ss Score
5.5
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGAAGACTTTAAAACAGTTCAGAAGGAAGTCGCTGATATCTTGAATGGAAGGATTTTAGTTGGGCATGCATTACACAATGACCTAAAG
Seq A exon
GTCCTATTTCTTGATCATCCTAAGAAGAAAATACGTGACACACAAAAATACAAACCTTTCAGACAGAGAGTCAAG
Seq C2 exon
AATGCACGGCCATCATTGAAGCTGCTCTGTGATAGACTTCTAGATGTTCAGGTGCAGACATCAGAGCACTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003166_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(19.2=100)
A:
PF0092919=RNase_T=FE(15.9=100)
C2:
PF0092919=RNase_T=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGACTTTAAAACAGTTCAGAAGG
R:
CAGTGCTCTGATGTCTGCACC
Band lengths:
159-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]