BtaEX6047304 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019721 | REXO4
Description
REX4, RNA exonuclease 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr11:104360261-104362172:-
Coord C1 exon
chr11:104362084-104362172
Coord A exon
chr11:104360997-104361071
Coord C2 exon
chr11:104360261-104360335
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTCGGGCCTGCCTTCTCCAGGCG
3' ss Score
7.88
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GAGAAGAGTTTGAAGTTGTTCAGAGGGAAGTCGCGGAGCTGCTCAAGGGCCGGATTCTGGTCGGACACGCGCTGCACAACGACCTCAAG
Seq A exon
GCGCTGTTTCTGGGCCACCCGAAGAAGAAGATCCGGGACACTCAGAAGTACAAGCCTTTCAGGACCCAAGTGAAG
Seq C2 exon
AGTGGACGGCCGTCTCTGAAGTTGCTTGCAGAGAGAATCCTGGGGATCCAGGTGCAGCAGGCAGAGCACTGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019721-'12-12,'12-10,16-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.280 C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(19.2=100)
A:
PF0092919=RNase_T=FE(15.9=100)
C2:
PF0092919=RNase_T=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTTTGAAGTTGTTCAGAGGGA
R:
GAACAGTGCTCTGCCTGCTG
Band lengths:
159-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]