DreEX0007461 @ danRer10
Exon Skipping
Gene
ENSDARG00000088619 | REXO4
Description
REX4, RNA exonuclease 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr21:5828900-5830213:+
Coord C1 exon
chr21:5828900-5828988
Coord A exon
chr21:5829978-5830052
Coord C2 exon
chr21:5830139-5830213
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCCCTTTGTCTCGTTTTTAGATT
3' ss Score
11.79
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCGAGGACATCAAAACAGTGCAGAAGGAAGTGGCTCAGATTCTGAAAGGAAGGATTTTAGTGGGACACGCCATTCATAATGATTTAAAG
Seq A exon
ATTCTGCTGTTGGATCATCCCAAGAAAATGATCAGAGACACACAGAGATACAAGCCATTCAGGCAGAAAGTAAAG
Seq C2 exon
AGCTCTCGTCCTGCATTGAGGAATTTATGCAGACAGATTCTCAATGTTCAAGTCCAGCAGGGTGAACATTCGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088619-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.360 C2=0.160
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(19.2=100)
A:
PF0092919=RNase_T=FE(15.9=100)
C2:
PF0092919=RNase_T=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGGACATCAAAACAGTGC
R:
AGACGAATGTTCACCCTGCTG
Band lengths:
164-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]