MmuEX6101844 @ mm9

Exon Skipping

Gene

ENSMUSG00000005233 | Spc25

Description

SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913692]

Coordinates

chr2:69040629-69043235:-

Coord C1 exon

chr2:69043083-69043235

Coord A exon

chr2:69042913-69042978

Coord C2 exon

chr2:69040629-69040775

Length

66 bp

Sequences

Splice sites

3' ss Seq

TCTTGTAATTTGTCTTTCAGAAA

3' ss Score

9.67

5' ss Seq

ACCGTATGT

5' ss Score

6.73

Exon sequences

Seq C1 exon

TGTCTTAAAACATAATGGGTGAAGACGAATTGGCACTCTTAAATCAAAGCATCAATGAATTTGGGGATAAGTTCAGAAACAGACTCGATGATAATCATAGTCAAGTGCTGGGACTTAGAGACGCCTTCAAGGACTCCATGAAAGCGTTTTCAG

Seq A exon

AAAAGATGTCTTTGAAATTAAAGGAAGAAGAGAGGATGACTGAGATGATTCTGGAGTATAAAAACC

Seq C2 exon

AGCTCTGTAAGCAGAATAAGCTCATTCAAGAAAAGAAAGAGAATGTGTTGAAGATGATTGCTGAAGTAAAAGGCAAGGAGCAAGAGTCGGAAGAGCTGACTGCTAAAATCCAGGAGCTCAAGGAAGAGTACGCTAGGAAGAGGGAAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000005233-'4-6,'4-5,5-6=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.032 A=0.107 C2=0.257

Domain overlap (PFAM):

C1:

PF0149614=V_ATPase_I=PU(11.4=48.9),PF043367=DUF479=PU(14.6=27.7),PF101864=Atg14=PU(29.4=85.1),PF083176=Spc7=PU(24.9=91.5),PF148171=HAUS5=PU(20.5=57.4),PF0396210=Mnd1=PU(26.7=76.6),PF112943=DUF3095=PU(6.0=23.4)

A:

PF0149614=V_ATPase_I=FE(10.9=100),PF043367=DUF479=FE(24.7=100),PF101864=Atg14=FE(16.2=100),PF083176=Spc7=FE(12.7=100),PF148171=HAUS5=FE(16.7=100),PF0396210=Mnd1=FE(16.3=100),PF112943=DUF3095=FE(12.0=100)

C2:

PF0149614=V_ATPase_I=FE(24.3=100),PF043367=DUF479=FE(55.1=100),PF101864=Atg14=FE(36.0=100),PF083176=Spc7=FE(28.3=100),PF148171=HAUS5=FE(37.1=100),PF0396210=Mnd1=FE(36.3=100),PF112943=DUF3095=FE(26.6=100)

Main Inclusion Isoform:

ENSMUSP00000107938