DreEX6038588 @ danRer10
Exon Skipping
Gene
ENSDARG00000078433 | spc25
Description
SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060810-13]
Coordinates
chr9:49124146-49127231:+
Coord C1 exon
chr9:49124146-49124302
Coord A exon
chr9:49126925-49126990
Coord C2 exon
chr9:49127085-49127231
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCTCTACACAGATA
3' ss Score
12.77
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CTCATCATGGCATCTGTCAGAGAATATAATGTAGTGGAGCAGTTCAACAGCAAACTGGAGGAGATCAGGGCCAAAATGCTGGATCAGGCCATGGGAGAAGTGCTCAATGACACGGAGCTCTGTCAGGAACACAGGCAGTACAAGAAATCTGTCCTGG
Seq A exon
ATACATGCTTTAAGAAATGCAAAGAGGATGAAACCATGTTTGACATGATACAAAAAAACAAACAAG
Seq C2 exon
AATTGAAGGAGAACTCGTCTTTACTGAGAGAGAAGTCTGCTGAACATGTTGAGATTGTGTCGGGGATTGAAGACAAGGAGCATCACAAAGCGCTCCTGTTTCAGAGAATTGAGAAGCTCAAGAAGGATCAGGCCAAAAACAGGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078433-'3-3,'3-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.087 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCCAAAATGCTGGATCAG
R:
GCTCCTTGTCTTCAATCCCCG
Band lengths:
172-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]