GgaEX0016314 @ galGal4
Exon Skipping
Gene
ENSGALG00000010900 | SPC25
Description
kinetochore protein Spc25 [Source:RefSeq peptide;Acc:NP_001264786]
Coordinates
chr7:18426550-18428312:+
Coord C1 exon
chr7:18426550-18427261
Coord A exon
chr7:18427346-18427411
Coord C2 exon
chr7:18428166-18428312
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTGGAGTCTCTTCCCTGCAGAGA
3' ss Score
7.46
5' ss Seq
ATGGTACAG
5' ss Score
3.5
Exon sequences
Seq C1 exon
CGGAGGTTTGAAAGCTGCGGGTGCTGCCGCTGCTAGCAGCTGCGCGCGGGGGGCGGCCCGGCTCGAGCCACAGGAGCGCGGCGGGGCGCAACAGCACCGCGGGGATCTCTGCCGGTAGTATCCCTCACGCCGCGCGGAGCCTTGGGCCAGGATAGCCGCCGCTGCGGCGGCAAAGGAAACCGAGCTACCGCCGTCACTGGTTGGTGACGGAGGCAACGTAAAGGAAAAGGTTAACGACAACTCACGGGGGATAAAAGCAACCCTGAAGCTCTCCCGTTAACGTTGGGTACAGCTGCTGAGGTCGGCTTGCGTCTCGGCACGGTATTCGTTTATACGTTGTGGCATCATGTCTGCTGTAAAGACAGAAGATGAAATAACCGTCGTTGAGAGGGAAATGAAAGAATTTTGGACTGAATTAAAAAGCGTTTATGGCACTGAACAGATCAATCAGACTTTAGCACTGAGAGACTCGTGCAAGGAGTCCATAAACGTACTTTCAG
Seq A exon
AGAGATGGTCCAAGAAGCTGAAAGAAGGGGACCTGATGATTGATAAAATTCAGGAGTACAGGAATG
Seq C2 exon
AGATTCTCCAGCAGAACAAACATATATCAGAAAATGAAAAACATTTGACAGAAATAAAATCTAACCTAAACCATGAAGAAGAGCAAAAGAAGGAGCTGACTGACAGTATCCAAGAGCTTAAAGAAGAGTTGATGAAAAAAAAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010900_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.580
Domain overlap (PFAM):
C1:
PF083176=Spc7=PU(26.1=92.3)
A:
PF083176=Spc7=FE(12.0=100)
C2:
PF083176=Spc7=FE(26.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTTTATGGCACTGAACAGA
R:
GTCAGTCAGCTCCTTCTTTTGCT
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]