BtaEX0034306 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010048 | SPC25
Description
Bos taurus SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) (SPC25), mRNA. [Source:RefSeq mRNA;Acc:NM_001034230]
Coordinates
chr2:27297968-27303650:+
Coord C1 exon
chr2:27297968-27298120
Coord A exon
chr2:27298225-27298290
Coord C2 exon
chr2:27303504-27303650
Length
66 bp
Sequences
Splice sites
3' ss Seq
CAACTCCTTTCCTCTTTCAGAAA
3' ss Score
11.06
5' ss Seq
ATCGTATGT
5' ss Score
5.94
Exon sequences
Seq C1 exon
CCTTGTCTTACAAAATGGTAGAGGATGAACTGGCACTATTTGATAAAAGCATAAATGAATTTTGGAATAAATTCAAAAGCACTGTCAGTGACACCTCCTGTCAGATGGTGGGACTAAGAGAAACCTACAAGGACTCCATTAAAGCATTTGCAG
Seq A exon
AAAAGCTGTCTGTGAAATTAAAGGAAGAAGAACGGATGGTTGAAATGTTTCTGGAATATCAAAATC
Seq C2 exon
AAATCTGCAGACAGAATAAGCTCATTCAAGAGAAAAAAGAGAATTTATTAAAGTTGATTGCTGAAGTAAAAGACAAAAAACAGGAAGTGGAGGCACTGACTGCAAATATCCAGGATCTTAAGGAAGAATATGCTAGGAAGAAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010048_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083176=Spc7=PU(24.6=91.5),PF131661=AAA_13=PU(25.2=85.1),PF086146=ATG16=PU(27.9=76.6),PF039618=DUF342=PU(21.0=63.8),PF101864=Atg14=PU(20.0=53.2)
A:
PF083176=Spc7=FE(12.6=100),PF131661=AAA_13=FE(13.8=100),PF086146=ATG16=FE(17.1=100),PF039618=DUF342=FE(15.4=100),PF101864=Atg14=FE(17.6=100)
C2:
PF083176=Spc7=FE(28.0=100),PF131661=AAA_13=FE(30.8=100),PF086146=ATG16=FE(38.0=100),PF039618=DUF342=FE(34.3=100),PF101864=Atg14=FE(39.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTCAGTGACACCTCCTGT
R:
GTGCCTCCACTTCCTGTTTTT
Band lengths:
169-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development