HsaEX6016484 @ hg38
Exon Skipping
Gene
ENSG00000152253 | SPC25
Description
SPC25, NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:HGNC:24031]
Coordinates
chr2:168877238-168889533:-
Coord C1 exon
chr2:168889387-168889533
Coord A exon
chr2:168889226-168889291
Coord C2 exon
chr2:168877238-168877384
Length
66 bp
Sequences
Splice sites
3' ss Seq
AAGTTCAATTTCTCTTTCAGAAA
3' ss Score
7.77
5' ss Seq
ATCGTATGT
5' ss Score
5.94
Exon sequences
Seq C1 exon
CATTGTCCTACATAATGGTAGAGGACGAACTGGCACTTTTCGATAAAAGCATAAATGAATTTTGGAATAAATTCAAAAGTACGGACACCTCCTGTCAGATGGCGGGACTAAGAGATACCTACAAGGATTCCATCAAAGCATTTGCAG
Seq A exon
AAAAGCTGTCTGTGAAATTAAAGGAAGAAGAACGAATGGTTGAGATGTTTCTGGAATATCAAAATC
Seq C2 exon
AGATCAGCAGGCAAAATAAGCTCATTCAAGAAAAAAAGGATAACTTGTTAAAATTGATTGCTGAAGTAAAAGGCAAAAAGCAGGAATTGGAAGTACTGACTGCAAATATCCAGGATCTTAAGGAAGAATATTCTAGGAAGAAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152253_MULTIEX1-3/6=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF083176=Spc7=PU(14.7=53.3)
A:
PF083176=Spc7=FE(13.5=100)
C2:
PF083176=Spc7=FE(30.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAGTACGGACACCTCCTGT
R:
ACTTCCAATTCCTGCTTTTTGCC
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains