MmuALTD0000526-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000075302 | 4933404M02Rik
Description
RIKEN cDNA 4933404M02 gene [Source:MGI Symbol;Acc:MGI:1913998]
Coordinates
chr2:70347501-70347758:+
Coord C1 exon
chr2:70347501-70347601
Coord A exon
chr2:70347602-70347622
Coord C2 exon
chr2:70347713-70347758
Length
21 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
AAATGTATCTACCACTCCAGGTT
3' ss Score
5.85
Exon sequences
Seq C1 exon
GGCGTCCCAGGCTCGCAACTCGGAACCCACCGCGAGTGCGGAGCGGGGCTGGCCTTCCTGGTCTGCCCTTCGAGGAAACAACTTGGCAGGGCGGCCAGAGG
Seq A exon
GTAAGCAGCAGTGTGGTGACT
Seq C2 exon
GTTGGTCCTGTGGAACCGCACGGCTGTCGAAATACTGCCCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075302-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCAACTCGGAACCCAC
R:
GCGGTTCCACAGGACCAAC
Band lengths:
109-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: