MmuALTD0000526-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000075302 | Erich2
Description
glutamate rich 2 [Source:MGI Symbol;Acc:MGI:1913998]
Coordinates
chr2:70509444-70509701:+
Coord C1 exon
chr2:70509444-70509544
Coord A exon
chr2:70509545-70509565
Coord C2 exon
chr2:70509656-70509701
Length
21 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
AAATGTATCTACCACTCCAGGTT
3' ss Score
5.85
Exon sequences
Seq C1 exon
GGCGTCCCAGGCTCGCAACTCGGAACCCACCGCGAGTGCGGAGCGGGGCTGGCCTTCCTGGTCTGCCCTTCGAGGAAACAACTTGGCAGGGCGGCCAGAGG
Seq A exon
GTAAGCAGCAGTGTGGTGACT
Seq C2 exon
GTTGGTCCTGTGGAACCGCACGGCTGTCGAAATACTGCCCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075302-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.794 A=NA C2=0.078
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCAACTCGGAACCCAC
R:
GCGGTTCCACAGGACCAAC
Band lengths:
109-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types