MmuALTD0000526-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000075302 | Erich2
Description
glutamate rich 2 [Source:MGI Symbol;Acc:MGI:1913998]
Coordinates
chr2:70509444-70509701:+
Coord C1 exon
chr2:70509444-70509544
Coord A exon
NA
Coord C2 exon
chr2:70509656-70509701
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
AAATGTATCTACCACTCCAGGTT
3' ss Score
5.85
Exon sequences
Seq C1 exon
GGCGTCCCAGGCTCGCAACTCGGAACCCACCGCGAGTGCGGAGCGGGGCTGGCCTTCCTGGTCTGCCCTTCGAGGAAACAACTTGGCAGGGCGGCCAGAGG
Seq A exon
NA
Seq C2 exon
GTTGGTCCTGTGGAACCGCACGGCTGTCGAAATACTGCCCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075302-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.794 A=NA C2=0.078
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCAACTCGGAACCCAC
R:
GCGGTTCCACAGGACCAAC
Band lengths:
109-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types