MmuEX0020065 @ mm9
Exon Skipping
Gene
ENSMUSG00000026867 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:MGI Symbol;Acc:MGI:1913941]
Coordinates
chr2:34603461-34610079:-
Coord C1 exon
chr2:34609786-34610079
Coord A exon
chr2:34608191-34608282
Coord C2 exon
chr2:34603461-34603617
Length
92 bp
Sequences
Splice sites
3' ss Seq
AATGTTATCCCCTTTCCTAGATT
3' ss Score
7.78
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
CACCAGGTACACGGAGACGTGAGGGCGGAGGATCGGCGTACAGGTCCTGGCAAGGCGGTTCGCGACCGGGAGCGGAAGGGCGGCCGTGGTCCGGACCACCGATCCCAGGGGCCCCCGCGGCGCCGCGCACGCGCACTGCTGAGGGGGCAGCGCCGCCGCAGGAGGCAGGGAAACCGACTGGCGATCTGTGGCGGCGGCTGGGCGGCGGTGGCAGTTCGCAGCGAGGGCGACGGCTCCGAGGCCGAGAGGCAGTCCAGCGAGGACCTGGGCGCCGTCCTCCGCATGACCTCACCG
Seq A exon
ATTCCCTTCTGAAAATCCCCTATCTCCTCCCCGCTTCCCTGCAAGAGAATTTTATAATCAAGGACTCAATAGCCCTGTTCACCTAAAACTGG
Seq C2 exon
TCTCATAATGTAGTCCAAGCTGGTCTCAAACTTGAGATCCTGTCTCAGTGTTGGGATTACAGGTAAGTGTCATGATTTCCATTTCTTTCTAGAATTATTCTTTCAAGGGAGGATATATATTGGGGAGAATTGTTTTCATGTTCTAAGAATCTCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026867-'2-6,'2-5,3-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCGACTGGCGATCTGTG
R:
TCCCAACACTGAGACAGGATCT
Band lengths:
181-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: