MmuEX0050090 @ mm9
Exon Skipping
Gene
ENSMUSG00000036352 | Ubac1
Description
ubiquitin associated domain containing 1 [Source:MGI Symbol;Acc:MGI:1920995]
Coordinates
chr2:25854063-25863473:-
Coord C1 exon
chr2:25863239-25863473
Coord A exon
chr2:25862047-25862133
Coord C2 exon
chr2:25854063-25854587
Length
87 bp
Sequences
Splice sites
3' ss Seq
AGCCTGTTCTTCCCTCTTAGGCT
3' ss Score
9.1
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CATGTCAGTGCCTCAGGCCATGGAGTGGCTAATTGAACACTCAGAAGATCCAGCTATTGACACACCTCTTCCAGGCCATGCTGCTCAAGCAGGGGCCAGTGCTGCAGCCACTACCTCCTCCACCTCCTCTGAAGCTGCTGTGGGAACTAGTGTTGAAGATGAGGAGTCCCGGGATGAGCTCACAGAAATCTTCAAGAAGATACGCAGGAAAAAGGAATTTCGAGCAGATGCTCGG
Seq A exon
GCTGTCATTTCGCTGATGGAGATGGGCTTTGACGAGAAGGAAGTGATTGATGCCCTCCGAGTGAACAACAACCAGCAGAACGCTGCT
Seq C2 exon
CATTTGAAGACATGCTGGAGAATCCGCTTAACAGCACCCAGTGGATGAACGACCCAGAGACGGGCCCGGTCATGCTGCAGATCTCTAGGATCTTCCAGACGCTGAATCGCACGTAGGTGGTACCTACTGTGCTCCTTGGCTGTGCAGTCTCAGCAGTCTGTGAGGCAGTGGGCACAGGGTTCAGCCGGGATCTTGCCTGGACCACAGCTTCTCGGACTCTCCTTTCCAGACCTAACAGCTTATCAACTTCTGCCACATGGCTTGAAAGTTGCAGTCCTAGCTTCTGACAGGTGTCTACAGAAAGTGGCTGTTGCATTGGGAAGGTGAATGATTGCTGCCCGTCCCTCCAGATACTCTGCTGGGCTCCTGAAGTGCTACTTGAATTGACCCTTAGGTGTTTGCTTGTGGAGCCCAATGTATTTAAAAGAAGGCATGTTCTGATCCAAAGTGTTATGTCAAGTGTGCTAATTTAACCAGACTGACTCACAGATGGCTTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036352_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.644 A=0.202 C2=0.263
Domain overlap (PFAM):
C1:
PF0062726=UBA=PD(27.0=12.7),PF0062726=UBA=PU(8.1=3.8)
A:
PF0062726=UBA=FE(75.7=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCCACCTCCTCTGAAG
R:
GTTCATCCACTGGGTGCTGTT
Band lengths:
172-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: