GgaEX1061532 @ galGal3
Exon Skipping
Gene
ENSGALG00000001713 | UBAC1
Description
NA
Coordinates
chr17:8860097-8861786:+
Coord C1 exon
chr17:8860097-8860328
Coord A exon
chr17:8861421-8861507
Coord C2 exon
chr17:8861648-8861786
Length
87 bp
Sequences
Splice sites
3' ss Seq
AATCTGTGCAAATCTTATAGGCT
3' ss Score
5.68
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
TATGTCAGTGACACAGGCCATGGAGTGGTTGATAGAACATGCAGATGACCCTGCAGTGGATGCTCCACTGCCAGGTCAGACTCCATCCGAAGCTGCAGCTGAAGCTGGTGCATCCTCTGCTGAAGCAACTGCAGGTCCAAGTTCAGAAGCAGGTGGGGAAGAAGCCAAAGATGAGCTGACTGAAATATTTAAGAAGATACGAAGGAAAAGAGAGTTTCGCCCAGACCCACGG
Seq A exon
GCTGTCATCGCCCTAATGGAGATGGGATTTGATGAAAAAGAAGTGGTAGATGCACTCAGAGTAAACAACAACCAGCAAAATGCAGCT
Seq C2 exon
TGTGAATGGCTGCTGGGAGACAGAAAGCCTTCTCCAGAGGACTTAGATAAGGGAATTGACACAAACAGCCCTCTCTTCCAAGCCATCTTAGAAAACCCAGTAGTACAGTTAGGGTTAACCAACCCTAAAACTCTACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001713-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=0.172 C2=0.468
Domain overlap (PFAM):
C1:
PF0062726=UBA=PD(27.0=12.8),PF0062726=UBA=PU(8.1=3.8)
A:
PF0062726=UBA=FE(75.7=100)
C2:
PF0062726=UBA=PD(8.1=6.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAAGCAGGTGGGGAAGAA
R:
GCTTGGAAGAGAGGGCTGTTT
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]