BtaEX0038756 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039851 | UBAC1
Description
Bos taurus UBA domain containing 1 (UBAC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076281]
Coordinates
chr11:103520808-103524282:-
Coord C1 exon
chr11:103524069-103524282
Coord A exon
chr11:103521541-103521627
Coord C2 exon
chr11:103520808-103520946
Length
87 bp
Sequences
Splice sites
3' ss Seq
GCCTGCGGCCTCTCCTGCAGGCT
3' ss Score
9.54
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CATGTCGGTGCCCCAGGCCATGGAGTGGCTCATCGAGCACGCAGATGACCCCACCATCGACACTCCACTCCCAGGCCCATCCTCGCAGGGAGAGGCAGGCGCCGAGGCCGCCCCTGCTGCCGGGACCAGTGAGGAGGAGGAGGAGGCCAGAGATGAGCTGACGGAGATCTTCAAGAAGATCCGGAGGAAAAGGGAGTTTCGTGCGGATGCCCGG
Seq A exon
GCTGTCATTTCCCTGATGGAGATGGGCTTCGACGAGAAGGAAGTGATCGACGCCCTCAGAGTGAGCAACAACCAGCAGAACGCCGCC
Seq C2 exon
TGCGAATGGCTGCTGGGCGACCGCAGGCCCTCTCCCGAGGAGCTGGACAAGGGCATCGACCCCGAGAGCCCCCTGTTTCAGGCCATTCTGGACAACCCCGTGGTGCAGCTGGGCCTGACCAACCCGAAGACCTTACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039851-'15-14,'15-12,20-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.681 A=0.172 C2=0.468
Domain overlap (PFAM):
C1:
PF0062726=UBA=PD(27.0=13.9),PF0062726=UBA=PU(8.1=4.2)
A:
PF0062726=UBA=FE(75.7=100)
C2:
PF0062726=UBA=PD(8.1=6.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGAGGCCAGAGATGAG
R:
GGTTGTCCAGAATGGCCTGAA
Band lengths:
175-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development