RnoEX0095633 @ rn6
Exon Skipping
Gene
ENSRNOG00000017983 | Ubac1
Description
UBA domain containing 1 [Source:RGD Symbol;Acc:1359542]
Coordinates
chr3:3453401-3469798:-
Coord C1 exon
chr3:3469725-3469798
Coord A exon
chr3:3461485-3461571
Coord C2 exon
chr3:3453401-3453921
Length
87 bp
Sequences
Splice sites
3' ss Seq
AGCTTGCTCGTCCCTCTTAGGCT
3' ss Score
6.85
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ACGTCTTGTTATTGATAAAGAAGCGTGCTCCTTCCCCAATCCCTAAGATGGCTGATGTCTCAGCAGAAGAAAAG
Seq A exon
GCTGTCATTTCGCTGATGGAGATGGGCTTTGATGAGAAGGAAGTGATTGATGCCCTCCGAGTGAACAACAACCAGCAGAACGCAGCT
Seq C2 exon
CATTTGAAGACATGCTGGAGAACCCACTTAACAGCACCCAGTGGATGAACGACCCAGAGACGGGCCCGGTCATGCTGCAGATCTCGAGAATCTTCCAGACACTGAATCGCACGTAGGTGGTGCCTACTGTGCTCCTTGGCTGTGCAGTCTCAGCAGTCTGTGAGGCGGTGGGCGCAGGGCCCAGCCAGGATCTTGCCTGGATCACAGCTTCAGTGACTCTCCTTTCCTGACCTAACGGCTTGTCATCTTCTGCCACATGGTTTGAAAGTTGCAGTCCCAGCTTCTGACAGGTGTTTACAGAGAGTGGCTATTGCACTGGGAAGGTGGTGTTTGCTGCCCCGTCCCCTCCAGACACTCTGCTGGGCTCCTGAAGTGCTACTTGAATTGACCCTTAGGTGTTTGCTTGTGTAGCCCAATGTATTTTAAAGAAGGCATGTTCTGATCCAAAGTGTTATGTCAAGTGTGCTAATTTAACTAGACTGACTCACAGATGGCTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017983_MULTIEX1-5/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.440 A=0.121 C2=0.263
Domain overlap (PFAM):
C1:
NO
A:
PF0062726=UBA=FE(75.7=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCCTTCCCCAATCCCTA
R:
CCACCTACGTGCGATTCAGTG
Band lengths:
170-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]