DreEX6013262 @ danRer10
Exon Skipping
Gene
ENSDARG00000059722 | ubac1
Description
UBA domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9372]
Coordinates
chr5:50589749-50590496:+
Coord C1 exon
chr5:50589749-50590001
Coord A exon
chr5:50590133-50590219
Coord C2 exon
chr5:50590358-50590496
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGTCGTTTGTGTGTAAGCAGGCA
3' ss Score
5.83
5' ss Seq
GCTGTATGT
5' ss Score
5.1
Exon sequences
Seq C1 exon
CATGTCTGTGACCCAGGCTATGGAATGGCTGATTGAGCATGTTGATGACCCCATGGTTGATGCGCCTCTACCAGGACAGGAGAGTCCAGGGGCAGCCGCCGCTGCAGCGCCTGCTCCAGGAGCCTCTGCCACAGCTTTAGCAGCCCGTGCTCGTTTGATCTCCCAGGCCAGCATAGACGAGGCCAAACAGGATGAACTGACAGAGATCTTTAAAAGGATCAGAAGAAAAAGAGAGTTCAGACCAGACTCACGG
Seq A exon
GCAGTGATTGCACTAATGGAGATGGGCTTCGATGAGAAGGAAGTGATCGATGCTCTCCGCGTCAATAATAATCAACAGGATGCAGCT
Seq C2 exon
TGCGAATGGCTGCTCGGTGACAGAAAGCCCAGTCCTGAGGATCTGGACAAAGGCATCGATACCAACAGTCCACTGTTTCAGGCTATCCTGGAGAACCCCGTTGTACAGCTTGGTCTCACAAACCCCAAGACTCTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059722-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=0.069 C2=0.362
Domain overlap (PFAM):
C1:
PF0062726=UBA=PD(27.0=11.8),PF065696=DUF1128=PU(81.4=41.2),PF0062726=UBA=PU(8.1=3.5)
A:
PF065696=DUF1128=PD(14.0=20.7),PF0062726=UBA=FE(75.7=100)
C2:
PF0062726=UBA=PD(8.1=6.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTCTGCCACAGCTTTAG
R:
TCAGGACTGGGCTTTCTGTCA
Band lengths:
172-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]