MmuEX0050090 @ mm10
Exon Skipping
Gene
ENSMUSG00000036352 | Ubac1
Description
ubiquitin associated domain containing 1 [Source:MGI Symbol;Acc:MGI:1920995]
Coordinates
chr2:26005326-26007953:-
Coord C1 exon
chr2:26007719-26007953
Coord A exon
chr2:26006527-26006613
Coord C2 exon
chr2:26005326-26005464
Length
87 bp
Sequences
Splice sites
3' ss Seq
AGCCTGTTCTTCCCTCTTAGGCT
3' ss Score
9.1
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CATGTCAGTGCCTCAGGCCATGGAGTGGCTAATTGAACACTCAGAAGATCCAGCTATTGACACACCTCTTCCAGGCCATGCTGCTCAAGCAGGGGCCAGTGCTGCAGCCACTACCTCCTCCACCTCCTCTGAAGCTGCTGTGGGAACTAGTGTTGAAGATGAGGAGTCCCGGGATGAGCTCACAGAAATCTTCAAGAAGATACGCAGGAAAAAGGAATTTCGAGCAGATGCTCGG
Seq A exon
GCTGTCATTTCGCTGATGGAGATGGGCTTTGACGAGAAGGAAGTGATTGATGCCCTCCGAGTGAACAACAACCAGCAGAACGCTGCT
Seq C2 exon
TGTGAATGGCTGCTGGGGGACCGGAAGCCATCCCCTGAGGAATTGGACCAGGGCATCGATCCCAATAGCCCTCTCTTTCAGGCCATCCTGGACAACCCAGTGGTGCAGCTGGGTTTGACAAACCCTAAGACATTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036352-'21-25,'21-24,22-25
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.644 A=0.202 C2=0.469
Domain overlap (PFAM):
C1:
PF0062726=UBA=PD(27.0=12.7),PF0062726=UBA=PU(8.1=3.8)
A:
PF0062726=UBA=FE(75.7=100)
C2:
PF0062726=UBA=PD(8.1=6.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCCACCTCCTCTGAAG
R:
CTGGTCCAATTCCTCAGGGGA
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types