MmuEX0050091 @ mm10
Exon Skipping
Gene
ENSMUSG00000036352 | Ubac1
Description
ubiquitin associated domain containing 1 [Source:MGI Symbol;Acc:MGI:1920995]
Coordinates
chr2:25998543-26006613:-
Coord C1 exon
chr2:26006527-26006613
Coord A exon
chr2:26005326-26005464
Coord C2 exon
chr2:25998543-25999067
Length
139 bp
Sequences
Splice sites
3' ss Seq
TGGTGTTCTTGGGTTTTTAGTGT
3' ss Score
7.08
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GCTGTCATTTCGCTGATGGAGATGGGCTTTGACGAGAAGGAAGTGATTGATGCCCTCCGAGTGAACAACAACCAGCAGAACGCTGCT
Seq A exon
TGTGAATGGCTGCTGGGGGACCGGAAGCCATCCCCTGAGGAATTGGACCAGGGCATCGATCCCAATAGCCCTCTCTTTCAGGCCATCCTGGACAACCCAGTGGTGCAGCTGGGTTTGACAAACCCTAAGACATTGCTAG
Seq C2 exon
CATTTGAAGACATGCTGGAGAATCCGCTTAACAGCACCCAGTGGATGAACGACCCAGAGACGGGCCCGGTCATGCTGCAGATCTCTAGGATCTTCCAGACGCTGAATCGCACGTAGGTGGTACCTACTGTGCTCCTTGGCTGTGCAGTCTCAGCAGTCTGTGAGGCAGTGGGCACAGGGTTCAGCCGGGATCTTGCCTGGACCACAGCTTCTCGGACTCTCCTTTCCAGACCTAACAGCTTATCAACTTCTGCCACATGGCTTGAAAGTTGCAGTCCTAGCTTCTGACAGGTGTCTACAGAAAGTGGCTGTTGCATTGGGAAGGTGAATGATTGCTGCCCGTCCCTCCAGATACTCTGCTGGGCTCCTGAAGTGCTACTTGAATTGACCCTTAGGTGTTTGCTTGTGGAGCCCAATGTATTTAAAAGAAGGCATGTTCTGATCCAAAGTGTTATGTCAAGTGTGCTAATTTAACCAGACTGACTCACAGATGGCTTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036352-'22-29,'22-25,28-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.202 A=0.469 C2=0.263
Domain overlap (PFAM):
C1:
PF0062726=UBA=FE(75.7=100)
A:
PF0062726=UBA=PD(8.1=6.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAACAACCAGCAGAACGC
R:
AGGTCTGGAAAGGAGAGTCCG
Band lengths:
258-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types