BtaEX0038758 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039851 | UBAC1
Description
Bos taurus UBA domain containing 1 (UBAC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076281]
Coordinates
chr11:103515902-103529949:-
Coord C1 exon
chr11:103529876-103529949
Coord A exon
chr11:103520808-103520946
Coord C2 exon
chr11:103515902-103516461
Length
139 bp
Sequences
Splice sites
3' ss Seq
TGCTCTTCTGGTGTTTGCAGTGC
3' ss Score
8.22
5' ss Seq
TAGGTGCGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
ATGTGATACTGTTGATCCGAAAGCGCGCTCCAGCCCCCCTCCCAAAGATGGCCGAAGTCTCCGCAGAAGAACAG
Seq A exon
TGCGAATGGCTGCTGGGCGACCGCAGGCCCTCTCCCGAGGAGCTGGACAAGGGCATCGACCCCGAGAGCCCCCTGTTTCAGGCCATTCTGGACAACCCCGTGGTGCAGCTGGGCCTGACCAACCCGAAGACCTTACTAG
Seq C2 exon
CATTTGAAGACATGCTCGAGAACCCGCTGAACAGCACCCAGTGGATGAACGACCCGGAGACGGGCCCGGTCATGCTGCAGATCTCCAGAATCTTCCAGACCCTGAACCGCACATAGGCCGTGCACTGCAGCTGCCAGGCCCAGAGAGCCTCTTCTTCCCAGCCCAAGGGGTGGGGAGAGCGTGCAGACCCCAGGGTGCCCCTGGGCTGGGGGCGGGGAGCAGGTGGGCTGGAGGGGACCCTGCCCTGGGTGTTGGGCGCCAGGGCCGCACTCCCGCTGGGATCTTCCTGTGAAAAACCTCGGGTGGCAGCGTGCTCGGTTGGCCTCCAGCCTCTGACAGTGTTTACAGACAAGGCCGTCACCCTGGGAAGGGGTCGCCTCCCTCCAGCGTCCCCTGGGCTCTTGAACCGCTACTTGAATTAACCGTAGGCGCTGCTTGTAGAGTCCACTTGTTATTTGAAACAAGGCATGTTTCAATCCAAAGTGTTATCGTCAAAGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039851_MULTIEX1-6/6=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.440 A=0.468 C2=0.263
Domain overlap (PFAM):
C1:
NO
A:
PF0062726=UBA=PD(8.1=6.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGTTGATCCGAAAGCGCG
R:
TCTGCACGCTCTCCCCAC
Band lengths:
255-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development