GgaEX0002015 @ galGal3
Exon Skipping
Gene
ENSGALG00000001713 | UBAC1
Description
NA
Coordinates
chr17:8861421-8869199:+
Coord C1 exon
chr17:8861421-8861507
Coord A exon
chr17:8861648-8861786
Coord C2 exon
chr17:8864043-8869199
Length
139 bp
Sequences
Splice sites
3' ss Seq
TGCTTGATGATTTCTTTCAGTGT
3' ss Score
6.97
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GCTGTCATCGCCCTAATGGAGATGGGATTTGATGAAAAAGAAGTGGTAGATGCACTCAGAGTAAACAACAACCAGCAAAATGCAGCT
Seq A exon
TGTGAATGGCTGCTGGGAGACAGAAAGCCTTCTCCAGAGGACTTAGATAAGGGAATTGACACAAACAGCCCTCTCTTCCAAGCCATCTTAGAAAACCCAGTAGTACAGTTAGGGTTAACCAACCCTAAAACTCTACTAG
Seq C2 exon
CCTTCGAAGATATGCTTGAAAACCCCTTGAACAGCACTCAGTGGATGAATGATCCAGAAACTGGGCCTGTCATGCTACAGATCTCTCGAATCTTCCAGACACTGAATCGCACATAGAGGGGAATGCCAGACCACTGTGCCACTTCCTGCTGTCCCTTGTGTCACCTTCTCAATGGGGAGGGTGCATGGATTGTTTGGGGAGGGGGGAGGGATGCTGTCTGAGTAGGGGTCTCATGTGAGAGCTTATGTAGTTATGGCCAACTGAAGTTAATTGCCTTGTGAATTTAGTGTTAGTGGAAGAGGTTTGAAGACTTGTATATGTTTTCAGGTGTTAGGTTAAAAATAAAGTATATCAAAAAATAGGAAAAGGTTTTGTGAAAACAATTAAGAATCTGCTTGTCAGAAAGAAATATGATATTGCTTGATAAAAAAAAAGGCCTGTGACAGTAGTTTTCTAGCCAGTTTTACTAGCACCTGGCTAGTGTTTACAAAAGGTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001713_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.468 C2=0.289
Domain overlap (PFAM):
C1:
PF0062726=UBA=FE(75.7=100)
A:
PF0062726=UBA=PD(8.1=6.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCATCGCCCTAATGGAG
R:
GACACAAGGGACAGCAGGAAG
Band lengths:
249-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]