RnoEX0095635 @ rn6
Exon Skipping
Gene
ENSRNOG00000017983 | Ubac1
Description
UBA domain containing 1 [Source:RGD Symbol;Acc:1359542]
Coordinates
chr3:3453401-3461571:-
Coord C1 exon
chr3:3461485-3461571
Coord A exon
chr3:3460501-3460639
Coord C2 exon
chr3:3453401-3453921
Length
139 bp
Sequences
Splice sites
3' ss Seq
TGGTGTTCTTGGGTTTTTAGTGT
3' ss Score
7.08
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GCTGTCATTTCGCTGATGGAGATGGGCTTTGATGAGAAGGAAGTGATTGATGCCCTCCGAGTGAACAACAACCAGCAGAACGCAGCT
Seq A exon
TGTGAATGGCTGCTGGGGGACCGGAAGCCATCCCCTGAGGAGTTGGACCAGGGCATCGATCCCAATAGCCCTCTCTTTCAGGCCATCCTGGACAACCCAGTGGTGCAGCTGGGTTTGACAAACCCTAAGACATTGCTAG
Seq C2 exon
CATTTGAAGACATGCTGGAGAACCCACTTAACAGCACCCAGTGGATGAACGACCCAGAGACGGGCCCGGTCATGCTGCAGATCTCGAGAATCTTCCAGACACTGAATCGCACGTAGGTGGTGCCTACTGTGCTCCTTGGCTGTGCAGTCTCAGCAGTCTGTGAGGCGGTGGGCGCAGGGCCCAGCCAGGATCTTGCCTGGATCACAGCTTCAGTGACTCTCCTTTCCTGACCTAACGGCTTGTCATCTTCTGCCACATGGTTTGAAAGTTGCAGTCCCAGCTTCTGACAGGTGTTTACAGAGAGTGGCTATTGCACTGGGAAGGTGGTGTTTGCTGCCCCGTCCCCTCCAGACACTCTGCTGGGCTCCTGAAGTGCTACTTGAATTGACCCTTAGGTGTTTGCTTGTGTAGCCCAATGTATTTTAAAGAAGGCATGTTCTGATCCAAAGTGTTATGTCAAGTGTGCTAATTTAACTAGACTGACTCACAGATGGCTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017983_MULTIEX1-7/7=5-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.415 C2=0.263
Domain overlap (PFAM):
C1:
PF0062726=UBA=FE(75.7=100)
A:
PF0062726=UBA=PD(8.1=6.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTGATGCCCTCCGAGTG
R:
GCTGTGATCCAGGCAAGATCC
Band lengths:
253-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]