DreEX6013261 @ danRer10
Exon Skipping
Gene
ENSDARG00000059722 | ubac1
Description
UBA domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9372]
Coordinates
chr5:50590133-50597279:+
Coord C1 exon
chr5:50590133-50590219
Coord A exon
chr5:50590358-50590496
Coord C2 exon
chr5:50593491-50597279
Length
139 bp
Sequences
Splice sites
3' ss Seq
AAATCTATTTTCCCACACAGTGC
3' ss Score
6.55
5' ss Seq
TAGGTGACT
5' ss Score
3.75
Exon sequences
Seq C1 exon
GCAGTGATTGCACTAATGGAGATGGGCTTCGATGAGAAGGAAGTGATCGATGCTCTCCGCGTCAATAATAATCAACAGGATGCAGCT
Seq A exon
TGCGAATGGCTGCTCGGTGACAGAAAGCCCAGTCCTGAGGATCTGGACAAAGGCATCGATACCAACAGTCCACTGTTTCAGGCTATCCTGGAGAACCCCGTTGTACAGCTTGGTCTCACAAACCCCAAGACTCTTCTAG
Seq C2 exon
CATTTGAGGACATGCTGGAGAATCCGCTGAACAGCACACAGTGGATGAATGATCCTGAGACGGGTCCCGTCATGCTCCAAATCTCCAGAATCTTCCAGACACTAAACCGCACATAAGCACACCTCATCGCTGGAGCAGCCGGAACCACAGTGCAGGGGAAAATGTAAATCGTTTATAAGAGAACTGTGTGAGTTTGTGTGTGTGTGTGTGTGTTTGTGGCTTAATTATTGTTTTAAGTGGGAAGTCACAGATGATGAATGTAAAAATACTATGATGACATTTTCACATCATGATATACAGAGGAAAATATCTATTTATAACTTTACTCAAGACTTGTACAAAGCAGTAACATAAAGATAAATCGCTAACTACATTATTTAGTTTTTTATGTTTTAGGAAGATCTGTTTTTAATTATGTTAAGCACATGCTTTATTTTATATCATTTCCCTGTGTAACTGTACAATTAGTCATCTAAAAAGAAAAAAAGGAATTTTGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059722-'8-12,'8-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.362 C2=0.263
Domain overlap (PFAM):
C1:
PF065696=DUF1128=PD(14.0=20.7),PF0062726=UBA=FE(75.7=100)
A:
PF0062726=UBA=PD(8.1=6.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTAATGGAGATGGGCTTCG
R:
CATTTTCCCCTGCACTGTGGT
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]