HsaEX6063965 @ hg38
Exon Skipping
Gene
ENSG00000130560 | UBAC1
Description
UBA domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30221]
Coordinates
chr9:135938222-135945250:-
Coord C1 exon
chr9:135945028-135945250
Coord A exon
chr9:135939673-135939759
Coord C2 exon
chr9:135938222-135938360
Length
87 bp
Sequences
Splice sites
3' ss Seq
ACGGCTGTGCTGTCCTCTAGGCC
3' ss Score
9.91
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CATGTCGGTGCCTCAGGCCATGGAGTGGCTAATTGAACACGCAGAAGACCCGACCATAGACACGCCTCTTCCTGGCCAAGCTCCCCCAGAGGCCGAGGGGGCCACAGCAGCTGCCTCCGAGGCTGCCGCGGGAGCCAGCGCCACCGATGAGGAGGCCAGAGATGAGCTGACGGAAATCTTCAAGAAGATCCGGAGGAAAAGGGAGTTTCGGGCTGATGCTCGG
Seq A exon
GCCGTCATTTCCCTGATGGAGATGGGGTTCGACGAGAAAGAGGTGATAGATGCCCTCAGAGTGAACAACAACCAGCAGAATGCCGCG
Seq C2 exon
TGCGAGTGGCTGCTGGGGGACCGGAAGCCCTCTCCGGAGGAGCTGGACAAGGGCATCGACCCCGACAGTCCTCTCTTTCAGGCCATCCTGGATAACCCGGTGGTGCAGCTGGGCCTGACCAACCCGAAAACATTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130560-'22-25,'22-23,27-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.693 A=0.121 C2=0.447
Domain overlap (PFAM):
C1:
PF0062726=UBA=PD(27.0=13.3),PF0062726=UBA=PU(8.1=4.0)
A:
PF0062726=UBA=FE(75.7=100)
C2:
PF0062726=UBA=PD(8.1=6.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGAGGAGGCCAGAGATGA
R:
AGGATGGCCTGAAAGAGAGGA
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains