MmuALTD0004902-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000036813 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:MGI Symbol;Acc:MGI:1919340]
Coordinates
chr2:24939188-24939608:+
Coord C1 exon
chr2:24939188-24939250
Coord A exon
chr2:24939251-24939254
Coord C2 exon
chr2:24939345-24939608
Length
4 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
GCCTTTTCCTCTCTCTGCAGAGC
3' ss Score
13.04
Exon sequences
Seq C1 exon
CTACCTCTGCTTTGGGCGGGACCAGATCCTGAACAGGCTCCTGGCTAAGCTGGCACAGGACAG
Seq A exon
GTTG
Seq C2 exon
AGCAGCCAGGTGGCCCCGGTCAGACACCCATGCTACCACAGTGGCTACCAGGCCATACTGCCACTGAGTTCCTTGTATGACTCACCCTGCATCCACACTACAGATTCCCTGAACCACACCCAGAACCTCACAGTTGAAGGGACAGGCGACCCTGGGAACTGTGTGGTAGCTCTCCGAAGTCTCTTCAACTTCTCCAGCTGTAAGGGCCAGAAGGATTGTGCTTTCAATGGCATCTACCAGCCTCCTGTGCACGGCCAGTTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036813-7-10,8-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(23.9=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(20.1=100)
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGCTAAGCTGGCACA
R:
GGAACTCAGTGGCAGTATGGC
Band lengths:
98-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: