MmuINT0062640 @ mm9
Intron Retention
Gene
ENSMUSG00000027086 | Fastkd1
Description
FAST kinase domains 1 [Source:MGI Symbol;Acc:MGI:2444596]
Coordinates
chr2:69542310-69543589:-
Coord C1 exon
chr2:69543479-69543589
Coord A exon
chr2:69542442-69543478
Coord C2 exon
chr2:69542310-69542441
Length
1037 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGTC
5' ss Score
-3.35
3' ss Seq
ATAATGTGTGTTCTTTTTAGGAT
3' ss Score
11.34
Exon sequences
Seq C1 exon
GCTTAAATCAACTATACTACTGCTGTCAGAGGAGCTGAGCAGCCAGCAAGCGCTGATCGTGTTGGGAGCAATGGAAGATATGGAAAGCAGAAATTCACACTTGCTTAAAAA
Seq A exon
GTAGTCTTTCCTGAGTTCATGGTGCTGTTTAGTTGTCACTCATAAGTATTGTTCTTTGTTTTTTTTACTTCTGACGGAAGTACTTCATGTTTGATTGTTTTGAAGTAGTATGGGATGGTCGCTTAACGCTTTGCTGATGTTCCCGTTTGGGGTTTCAGAACAGAGACAGCGTGGTTTATAGCAGTTTTTATTCCCTTTACTGCTGCTGTAGACTGGAGCAGAGCGTCACAGTGCATAGAGCAAGGGCGCTGTGAATCCCGAAGCTTCCATGTGGACTTGTCTCACTGTCGCCTGTAATGTCATACAGTAGCTTATTGCAGCATGAGATTTAAGAAGGAAAAAAAACATTCAAGTTGCATATGTTTACTTTTCTTTATCATATATCTCTTTAGTGAAGGCTACTTAGTCTCATTTCTCATCACTTTTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCAATCGAGGTTAGCATGTCCATGTGAGGGCCAGAAGATTATGGAAGAAAATTGGATTAGTGTTGCTAATTGTTAGCAACTTATGATAAAACTGTTCTTGGCAGCAGGGAGTGGAATTTGATGCCTTTCTCTCTCTCTGTCTCTCTCTCATAAAGCTATGTTCTTCTTTAAAAAATACTATGTAAAAAAATTATGTGTGTGACTATTGGCTTGCATATATGTATTTGGATCATGTGCATGCCTGGTGCTGGCTGAGGCCAGAAGTTGTTGGATACCCTGAAACTGGAGTTACAGATCATTGTGAGCCACCATGTGGGTGCTGGGACCTAAACCCAGGTCTTACTAAACAGCCAGTGCTCTAACTGCTAAGTGATCTTCCTACTCCTACAGTTATGCTTTTCTCCCCTTTTCCAAATTTACACTTCATGATTGAGAGAATTCTGTAAAAACAGAAAATGAGATAATTTTACTGATCCCCAACATAGAGTAGAGTGTGTGGCATGAAGTCTGTGTAGCGATTGTTTAATAAATAAGTGAATCACTTGTTTATAATGTGTGTTCTTTTTAG
Seq C2 exon
GATTGTTTCTGTTCTGTACAAACATTTGGATAACTATAAATCGATAGAGCTATTGAAGATAATACAAGCATTGACTTTTCTACATTTTCAAAGTAAGGAGCTTTTTATGAAACTCAGAGAATTACTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027086-Fastkd1:NM_177244:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTAAATCAACTATACTACTGCTGT
R:
TCTCTGAGTTTCATAAAAAGCTCCT
Band lengths:
231-1268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: