RnoINT0059312 @ rn6
Intron Retention
Gene
ENSRNOG00000024335 | Fastkd1
Description
FAST kinase domains 1 [Source:RGD Symbol;Acc:1563531]
Coordinates
chr3:55942190-55943731:-
Coord C1 exon
chr3:55943621-55943731
Coord A exon
chr3:55942322-55943620
Coord C2 exon
chr3:55942190-55942321
Length
1299 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGTC
5' ss Score
-3.35
3' ss Seq
TTCGACTGTGTTCTTTTCAGGAT
3' ss Score
10.65
Exon sequences
Seq C1 exon
GCTTAAATCAACTATACTGCTGCTGTCAGAGGAGCTGAGCAGCCAGCAAGCGCTGACTGTGTTGGGAGCAATGGAAGACATGGAAAGCAGAGACTCACACTTGATTAAAAA
Seq A exon
GTAGTCTTTCCTGAAGTTGCTGGTGCTAAGTTTAGTTGTCAGTCATAAGTATCTTTTCTTCTTTTTCTGACAGGAATACTAGTGTTTGAGTGTTTTGAAGTAATAAGGAATGACCGCTTAAGACATTGCTATGTTCCCGCTGGGGATTTCAGAGCAGGGACAGCGGTTGTTGACAGCGGTTTTTTCTTTCCTTTACTGCTGCTGTTAGACTGGAGCAGAGCGCCACAGTGCATAGAGCAAGGGCTCTGTGTCTCCAGAAGCTTCCATGGGGACTCATCTCACTGTCGCCTGTAATGTCATAGCTTATTGGTAACATGAGATTTAAGAAGGAAAGAAAACCCGTTCAAATTGCATATGTTTAATTTTTCTTTATCATATGTCTCTTTAGTGACAGCTCCTCTGTTTCATTTCTCATCACTTTTCCCTCCTCCTCTTCCTCCTCATCCTCTTCTTCCTCTTCCTCCTTATCTCCTCTCCTCCTCTTCCTCCTCTCCTCCTCTCTCCTCCTCCTCCTTATCCACTCTCTCCTTATCATCCCCTCCTCCTCTCCTCCTTCTCATCCTCCTCAATACTCTCCTCTCATCCTCCTCCTCCATCCTCCCTCAATCTTCCTCCTCCTCATCCTCATCCTCCTCCTCCTCCTCCTCTTCCTCCTCATCCTCATCCTCATCCTCCTCCTCTCTCATGAGGGCCAGAAGATTATGGAAGAAAATGAGATTAGTGTTGCTAATTGTTAATAACTCAGATAAAACTGTTCTTGGCAACAGGATGTGAAATTTGATGCCTGCTCTGTGAGGTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTAGAGCTATGGTCTTTTAAAAAATACTATGTAAAAGAATGATGTGTTGACTGTTTGACTTGCATATATGTATTTGTGTCATATGCATGCCTGGTACTGGCCAAGGCCAGAAGTCGTTGGATCCCCTGAAACTAGAGATCCAGATCACTGTGAGCCACCATGTGGGCGCTGGGAACTGAACCCAGGTCTTACTAAACAGCCAGTGCTCCTAACTGCTGAGTGACCTTCCTACTCCTACAGCTGTGCTTTCCTCCCCTTTTTTAATTTACTCTTCCTGATTGTTCTTTATTTTAGTCATTTATGTTTCCATGAACGTCCTGAGAGAGTTCTGTAAAAACAGACAATGAGGTCATTTTACCGATCCTCAACATAGAGTGTGGCGTGGTCTGTCTAGCAGCTGCTTAGCAAGTAAGCGAACGGCTTGTTTCGACTGTGTTCTTTTCAG
Seq C2 exon
GATCGTGTCTGTCCTGTACAGACATTTGGATAACTGTAAATCAGTAGAGCTATTGAAGATAATACAAGCGCTGACATTCCTACACTTCCAAAGTAAGGAGCTTTTTATGAAACTCAGAGAAGTACTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024335:ENSRNOT00000036585:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTAAATCAACTATACTGCTGCTGT
R:
TCTCTGAGTTTCATAAAAAGCTCCT
Band lengths:
231-1530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]