RnoEX0035014 @ rn6
Exon Skipping
Gene
ENSRNOG00000024335 | Fastkd1
Description
FAST kinase domains 1 [Source:RGD Symbol;Acc:1563531]
Coordinates
chr3:55942190-55943731:-
Coord C1 exon
chr3:55943621-55943731
Coord A exon
chr3:55943331-55943412
Coord C2 exon
chr3:55942190-55942321
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCCTTTACTGCTGCTGTTAGACT
3' ss Score
3.61
5' ss Seq
CCTGTAATG
5' ss Score
-4.1
Exon sequences
Seq C1 exon
GCTTAAATCAACTATACTGCTGCTGTCAGAGGAGCTGAGCAGCCAGCAAGCGCTGACTGTGTTGGGAGCAATGGAAGACATGGAAAGCAGAGACTCACACTTGATTAAAAA
Seq A exon
ACTGGAGCAGAGCGCCACAGTGCATAGAGCAAGGGCTCTGTGTCTCCAGAAGCTTCCATGGGGACTCATCTCACTGTCGCCT
Seq C2 exon
GATCGTGTCTGTCCTGTACAGACATTTGGATAACTGTAAATCAGTAGAGCTATTGAAGATAATACAAGCGCTGACATTCCTACACTTCCAAAGTAAGGAGCTTTTTATGAAACTCAGAGAAGTACTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024335_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000036585fB5371
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACTGCTGCTGTCAGAGGAG
R:
TGTAGGAATGTCAGCGCTTGT
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]