DreINT0067257 @ danRer10
Intron Retention
Gene
ENSDARG00000056128 | fastkd1
Description
FAST kinase domains 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1833]
Coordinates
chr9:48550648-48552206:+
Coord C1 exon
chr9:48550648-48550758
Coord A exon
chr9:48550759-48552074
Coord C2 exon
chr9:48552075-48552206
Length
1316 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
ACGTGTTTTTTTTCTGACAGGAT
3' ss Score
9.99
Exon sequences
Seq C1 exon
GTTAGAGAGGACTGCGCTTCTATTGGCTGATGAGCTGAATTCCCAGCAGGCTTTAGTTGTGCTGGAGGCCATGGAGGATATGCAGTGCAGGAACCTTCAGCTGATCAACAA
Seq A exon
GTAAGTCAATTCAACTCGATTGAACATTGATAATTCAACATGCATCCCATAATCTCAGACAATCAATTCATTTGCTGTTCCAAAATTTTGGTTCAGTTATAAAAAAAACAGTTTATACTTTTATTCCGCAAGAATGTATTAAATTGATTAAAAGTGAAAGCAAAGATATGTAGTTTACAATTTACAATAAATGCTGATTTTTTGTAATCAATCAAAACTTTGTCAAATTGTCAATCATTTTTCAATCAGTTTTCACACAATATTAGGCAGCACAACTGTTTATAGCATTGATGATGATGATCATGATGATGATGATAATAATAATAATTATTAACAACAATAATAACAATAATAAAAATAATAAACAGCCTATTCTCTTTGACCCGATTGCATTTTTAAAGCTTGTATTGTGTTCTATTGTTTATTGTGTTTTTATTTGAATTGATTGTTTTAGTTGTCCTGTACGGTGACCTTGAGTGTCATGAAAGGCGCCTTTAAATAAAATGCATTATTATTATTATTAATAATAACAATAGTGGTAGTAGTTTTTTTTTTTTTTTAGACCAATATTATATCTTAACCCCATTAAGGTGCTAAAACTTCTACCCTAAACTCACAACAGGACTTTATTTAACTTCTATTATCATAAATTAAATTATAAGGTCATTTTAGCTGCTGTCAGTGTTAAGGCTGGTTTATACTTCTGCGTCGAGTGATCGTCCCGATTCACTTGTAAACACTCGCTCCATCGGGCTCACGGCTCTCAGCACCACCCACACTCATCAGCGCTACCAAGCTGACCAATCGTAGAGCTTGTGCTATGAATCGTAACAACATGTTTGCAATATTTTTTGAGAGGTGTGCGTCAGCCACTGCGAGAGGAATGCGACCATGCAAAGGCTGCACTGGATCAAACGCGTGTGCTTGAGACAGAAGTATAAATCAGCGTTTAAGACTGTAGAGTGTTTTTGCAAAGAGCGTTACATACTCTATAATACATGAATTATAGGATCATTTTAGCTGCCGTCAGTGGTTTTGGACACTTATGATCTTTGTATGTTTTTACAAAGAGAGTTACAGACTCTATAATACATGAATTATAGGGTCATTTTAGCTGCCGTCAGTGGTTTTGGACACTTATGATCTTTGTATGCTTTTACAAAGAGAGTTACATACTCTATAATATATGAATTATAGTGTCATTTTAGCTATCGTCAGTGGTTTTGGACACTTAAGTCCTTTGTGTGTTTTTGCAAAGACAGTTACATACTCTATAATGTCCAGATTGAAAATTTTACGTGTTTTTTTTCTGACAG
Seq C2 exon
GATGGAGTCGGTACTTTACAAAAATCTGGAAACCTATCGGCCACTGGAAATCACTCGAATTACTCAAGCGCTTGTCCTGCTGCACTGCCAGAATCCCGACATCCTCTCCAGACTGAAAACCAAACTGCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056128:ENSDART00000141405:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAGAGAGGACTGCGCTTCT
R:
AGCAGTTTGGTTTTCAGTCTGGA
Band lengths:
240-1556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]