HsaINT0062155 @ hg19
Intron Retention
Gene
ENSG00000138399 | FASTKD1
Description
FAST kinase domains 1 [Source:HGNC Symbol;Acc:26150]
Coordinates
chr2:170411634-170413807:-
Coord C1 exon
chr2:170413697-170413807
Coord A exon
chr2:170411766-170413696
Coord C2 exon
chr2:170411634-170411765
Length
1931 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
ATATGCTCTATCCTTTTTAGAGT
3' ss Score
9.75
Exon sequences
Seq C1 exon
ACTTAAATCAACTATGTTATTGATGTCAGAGGACCTAACTGGCGAGCAAGCCCTGGCAGTGTTGGGAGCAATGGGAGATATGGAAAGCAGAAACTCATGTCTGATTAAAAG
Seq A exon
GTATCTTTTCTGAAATTTACGACGTTAAGTTTGTTGTCATTCACAAGCACCTATTTTTTTCTAAGGAAAAATGGTTTTCTTCTTTAATCTACCAGTTGTTTTGAAGAAATAAGGAATTAATGCTTAAGCCACTGTTTATGTTCTACTTTGTTTTTCTTTTCTTTTTTTTTTTGTTTTTTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCACTATCTCTGCTTACTGCAACCTCTGCTTCCCTGGTTCAAGCAATTCTCTTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCACCACCATGCCCCAGCTAATTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGAGACAGAGTCTTGCTCTGTTGCCCAGGCTTGAGTGCAGTGGTGCCATCTCGGCTCACTGCAACCTCTGCCCCAGACGGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCCCGGATTACAGGCGTGTGCCACCACGCCTGGCTAATTTTTGTATTTTTTAGTAGAAGCGGGGTTTCACTGTGTTGGCCAGGCTGGTCTGGAGCTCCTGACCTCAAGTGATCCACCCACCTCAACCTCCCAGAGTGCTGGGATTACAGGCCTGAGCCACCGCACCCAGCCCTCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCGTTCACTTCGGCATCCCAAAGTGTTGAGCCACTGTGCCTGGCCGTTTTTTTTTTTGTTTTTTTTTTTTGAGACAGGGTATGGCTCTGTTGCTGAGGCTAGAGTGCAGTGGTGCCATCACAACTCACTGCACCCTCCACCTCCCAGGCTCAATTGATCCTCTCATCTCAGCCTCCTGAGTACCTGGGACTACAGGCACGTGTCGCCATGCCCACTAATTTTTGTATTTTTTGTAGACATGGTGTTTTGCCATGTTACCCAGGCTGGTCTCCAACTCCTGGGCTCAAGGAATCCATCCGCCTCAGCCTCCCAAAGTGCTGGTTTGTTTTTCAAAGTAGAAATGACAATTGTTTATAGCTTTTTCATTTTATTTGTGCTATTACACTCAAGCAGAGCATCATAACCTTGTAAAATAGAGAGCATAAAGACCCTCCTTTTATTTTTTTCTTTTCTTTTTGTTTTCTTACTTTTCTTTCTTAGTTTTAAAATTTTTTGTAGAGATAGGGTCTTACTATTTTGCCCAGTCTGATCTTGAACTCCTGGGCTCAAGCAGTTCTCCCAAAATTACCACCAAGGCTGTAATTTTCAAAAGGAAAGTTTCTGCAGCACAGTCAATGTCTATATGAACTTGAATTGTCTCACACCACAATGTTACCTTGAAGTCATACTGCCATTTGTTGGCTTTTTGGTAACTTGAGATTTCAGAAGAAAAAATATATACTTACATTTTTACATATGCTTAATTGTACATGCCTAATTTTTCATGACCTATTATATGTTCCTTTATTTTAATATTTCTTTGTCCCATTTTTTTCCAACTTACTGCCTCTTAGCATTTCCCTTTGCTTTTAAGCATCTTCATTTGAGGGCCAGTGGATTTACGGAAGAAAATTAAATTAGTTTTGCTAATTATTGGTAACTCTTGGTAAAGATTTTGTTATGGGGAGGATGTGGAAGTTGATGCTGTGTGAGATTTGTTTAACTGAGGAAGAAAAACTATGCTTTTCTCTTCTTGTACTATTGATAAGTGAATGTTATTTCATTCACACTTAATTGATTGCTTTTACTTCATTCTGTTTTAGTTGTTTACATTTCTAGAGCCACCTTGAGACATTTCTTCAAGAATAGAGAATCTCATCTCATTCATTGCCGTTTCTCCAGCACAGAACGGAGTGTCTGGTGTGAAAGCACCATAGTAAATGTGTAATAAATGAATGAACTGGTTATAATATATGCTCTATCCTTTTTAG
Seq C2 exon
AGTTACTTCAGTTCTGCATAAACATTTGGATGGCTATAAACCATTAGAGTTGTTGAAGATAACTCAAGAATTAACTTTTCTGCATTTCCAAAGGAAGGAGTTTTTTGCGAAACTTAGAGAATTACTGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138399-FASTKD1:NM_024622:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATGTTATTGATGTCAGAGGACCT
R:
AGCAGTAATTCTCTAAGTTTCGCA
Band lengths:
230-2161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)