MmuEX0028083 @ mm9
Exon Skipping
Gene
ENSMUSG00000036792 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:MGI Symbol;Acc:MGI:2138934]
Coordinates
chr2:48955237-49025533:+
Coord C1 exon
chr2:48955237-48955329
Coord A exon
chr2:48974172-48974325
Coord C2 exon
chr2:49025429-49025533
Length
154 bp
Sequences
Splice sites
3' ss Seq
CCTTGTTTGCTTTTTAACAGCGC
3' ss Score
9.4
5' ss Seq
GAGGCAAGC
5' ss Score
2.09
Exon sequences
Seq C1 exon
GAGAGCATCAAAGATGTCCACTTCTGCCTCCGTAAGATAGCTATTGCAGGCTGTGTGGTGGAGAAAATACCTATAGAAATTAAGACACTCAAG
Seq A exon
CGCCACAGAAATATTACAAGAAATCAAGAGCACAGAATATTTCCTTCCATCAATCCTCAGAACCCTGAAACATTTCTAACTCCATCAAACACAGAGCACAGAGGAAGGCCCACCTTGGCAGATGGCCACAGAGGATGTCAACAATTTCTTGGAG
Seq C2 exon
AGAGAAGCAGCACTCCCTTGCTGAGCACAGTGCCCCTGGACACTTGCCACCATTACACTGTTGGAGCTCACGCTTGCTATGCTTGTCCCAGTTTCTCTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036792_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCATCAAAGATGTCCACT
R:
TGGAGAGAAACTGGGACAAGC
Band lengths:
194-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: