BtaEX0021543 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019592 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:47955756-48110088:-
Coord C1 exon
chr2:48109988-48110088
Coord A exon
chr2:48064481-48064628
Coord C2 exon
chr2:47955756-47955856
Length
148 bp
Sequences
Splice sites
3' ss Seq
GCTTATTTTCCTTTTAACAGGAC
3' ss Score
10.3
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
GTTTTAGATGAATATTGAGGATATCAATTTCTGCATGTGGGAAGTAGATATTGAAGGTTATCTGGTTTACAGACAAGATCTTTAAAAAATAGACACTGAAG
Seq A exon
GACCAGGGAAATAAACACCAGAAGACAAGAACACGGAATATTTTCCTTCATCAGTCCGTAGAAGTATAATCCTCCTCTAATTTTATCAAACACAAAGGAATGACTACCTTGACAGATGGCCACAGAGGATGTCAACAATTTTTTGGAG
Seq C2 exon
AGAGAAGAGGTACTCCTTTATAGGGACTCATAGAGGCATAGACCATCTAGAGATTTACTGCCTCCATTACGCTGCTGGGTCTCACAGCACATGTTATGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019592-'0-2,'0-1,1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGGATATCAATTTCTGCATGTGG
R:
ACATAACATGTGCTGTGAGACCC
Band lengths:
186-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development