HsaEX0038090 @ hg19
Exon Skipping
Gene
ENSG00000204406 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:20444]
Coordinates
chr2:148936269-149099905:+
Coord C1 exon
chr2:148936269-148936362
Coord A exon
chr2:148990814-148990964
Coord C2 exon
chr2:149099783-149099905
Length
151 bp
Sequences
Splice sites
3' ss Seq
CCTGGTATCGTTTTTAACAGGAC
3' ss Score
9.07
5' ss Seq
GAGGCAAGC
5' ss Score
2.09
Exon sequences
Seq C1 exon
ATGTACATTGAAGATGTCAGTTTCTACATGTGGGAAGTAGACATTGAAGGCTTTATGGTTTACAGACAAGATCTTTAGAAGATAAGCACTAAAG
Seq A exon
GACCAAGGAAATAAATACCAGAAATCAAGAAGAGCACACACTATTTTCCTTCATCAATCCATAGAACCCTAATGCTTCTTTAGTTCCATCAAACACAGAGGAATGACCACCATGGCAGATGGCAACAGAGGATGTCAACAATTTTTTGGAG
Seq C2 exon
AGAGAAGAGGTACTCCCTTATAGGGACTCGTAAAGACATAGAGCATCTGGAAATTAACTGCCTCCATTACACTGCTGAGTCACACACAACGCTTGTTATGTTTTCATCACTTCTCTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204406-'8-16,'8-14,13-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGAAGATGTCAGTTTCTACATGT
R:
TCTGGAGAGAAGTGATGAAAACA
Band lengths:
210-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)