MmuINT0000786 @ mm9
Intron Retention
Gene
ENSMUSG00000044320 | 1700001O22Rik
Description
RIKEN cDNA 1700001O22 gene [Source:MGI Symbol;Acc:MGI:1923631]
Coordinates
chr2:30653388-30656336:-
Coord C1 exon
chr2:30656244-30656336
Coord A exon
chr2:30653501-30656243
Coord C2 exon
chr2:30653388-30653500
Length
2743 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
AAGACTGTGCTCATTTGCAGCCC
3' ss Score
6.68
Exon sequences
Seq C1 exon
GGACAAACCATTGCACTGGGACAACAATTTTAAAGAGAAGACTACCCTGGGGCTCCCAAGAGGTGAACTTGCCAGAGCCAAAAAGGCCCATCC
Seq A exon
GTGAGTAGTAGCTGTTGTGAGTACACACGTGCTATAATTTTGTAGCGTTGACTCTCTCCTCCCACCATCACGTGGGCTTGGGGGATGGAAAGGAGGTCATAGGCTTGCCTAACAATCACTTCTATCATTTCCCCAAGCCATGAGTTCTGGGAATGGGAACAGGAAGGCATTCGTTCGCTCCCTTGTTTCCAGACATTTAGTAATGGATTTACCGTGTATCTATCGATCCACTCACCTATCCATCCTTTCACGCACCTAACCCCTTACTCACAAACCAGGTCTTCTATAAGCTATTGTGAATCTCCATCCACCTAGCCATCGAAGCATCTAACTGGCCATGAACTCATAACTGCCCCCAAACTGCTGGACTGCCAGACAGCCAGTCTTTTGTTTATTCAGAAATCCCCTCTGGCTATAGCTGCCTGACAGCTATCCTTTCATTCATATAAACCCAGGATGCCAATCATCTCTCCGCTAGTAATAAAGCCACCCACACGCTTACATGGTTGTCTGCATAGCCATCCAGCTACCCAGCTGAGATCCAGACCTGAATCCACCTGCTGCTGAACTCTTCTCTCATTTAGAAGCATTACCCATGTATGAAGTTTTACTGTGTATCAGATGCTAGAGGAACAGACAATGAGAGACGGAACCAAGAAAGATCCCTGACATTAACCCACATTAATACCTGGAATTGGATGCTAAAGAGCTCTTAATGGAGAGGGGGAAGGAAACAACAGGTTTAAACAGGCTGGAGCACAAGTGCAGGGTGAAGGCCATTGTCTGGGGGGGTTAAAGACTAGAGAGTTGGGTGTGGTGGTGCACACTTTTAATCCCAGCACTCTGGAGGCTTAAGTAAGCAACTCTGTGAGTTCAAGGCCAGCCTGGTCTACATAGTGATTCCAGAACAGCCAGGGCTACAAAGTGAGACCCTGTCTCAATTAATCAATTTAAGGAAGGACCAGATGGACCAGGGAACATGCATACAGAGCAAGTGTACCATTACTGTTCCGTCTAGTAATGTCTGCTGGCAGACATTACTAATGGATCACTGCACATTTCTCTGTGAGCCTCAGAACCCTTCCTGACCCAGTTCTCTAGGATCAAAATAGAGACTTAGGAGGATGGAGAGATGCGTCAGCAGTTAAGAACACTGGCTGCTCTTTCAGAGAACCCGGGTACAGTTCCTAGCATCCACATAGCAGCTCACAGCTGTCTATAACTCCAGCTGTAGGAGATTTGACACCCTCAAACAGACCTACATGCAGACAAAACACTAAAAAAAAAATCACTAAAAAAGTGGAGCCTAGAGTTGGACACTTATGTATACATAACATTCCTTCAGTATGATAGATTGCTTCAGTGAATGATCCTCCCCAGGCAGCGAAGCATGGTGCCACTCTGTTGGGCAGGACCTAGGAGATGTCTAAGCCTCGCCCTGTTGCCAGAACAGAGCTGAGGTTCCACATGCACACAACTGTGACCCTAACTAAGCCCCAACATCTATAGTCCCGGCTGCATGGCTCTTTGGTGGACAGTGAGAAACACACCCTATGCTTCCACAAAGGTGCCCCAGGATCAGTGGGTATGGGTGTGTAAATACGTGTGGCCAAGGTGAAGAAAGTCCAATGGGGCATTTCTGAGTGATCAAGTAACCAGGCTGGCAGCCCAGCCCCTGAGGGAGAAGTGAACAGGTCTAACATTTTTATTACATACAAATATAACACACCCTTTATAGAGCACAACCCCACTGACAGGCCCTGTTCTAGGTGCCTCCCCACACGGGGTACTCCACTCTCCCAGTTCCTGTGACGGCGGAATGATCCCGCCTGTAACAGAGCACATGACCGGAAGGAGAAAAGTGACAAGTGGAACCCTGAGGACAGTGTGCCCCAGCTCACACGGCCTCAGCGGCACAATCGAGGCTGACAGCTATCGTGACAGCTCGAAACTAGAGGCGCTTCTTCCGCCCGGCATACCCTCGACAGGATGCTCTTGCAGCCCGCCCCATCTCTTCACACCTGTGCTGAGGAAGGGGTGGGGCACCATCATTTCCTTATTTTTATTTCTATCTGCTTATTTGTCAACCCGTAGCCCAGGCTGGATTCACACTCACTATGTAGCCAAGGATGGCCTTTAACTCTTGATCCTTTGGCCTCCACCTCCCAAGTGTCCCACCCGCCACACCGTGCCTGGCTTAATCTCCATCGCAGAGGAGGAGACAGGTTTCTGTGTGTCAGGACCTCTCGATGGCTCTAGCCTGCGGGCCAGACATCTCTGTGCCTCAGTCTCCTCACTTGTAATTGGGATAGTGACAGGGTTCCGTGGGCACTGCTCAGGTTTGGTGGGATAAAACATGCCACACGATGATGGAAGGAGCACTTGTGACTGGTAGAGCTCCGCCACCAACCAAAATCTGTCCAAGATTTATATTTTATTTGTGTGTGTGTGTGGGTGGGTGGGGGCAGGGTGTTCACATGAGCCCTGGTGCCTGCAGAGGCCAGAAGAAGGTGTCAGATTACCTCAGGAGTGGAAGTCACAGACAGTAAGCCAACAATGTGGGTGCTAGGACCAAATCCAGGTCCTCCTCAGGAGCACTCAGGAATGCACGCTTAAAGGCTGAGCCATCTCTCCAAGCCCTAGCTGAGATCTTACGAGGAGCCTTGTTCCCCGGCCTCTCGTTTCCCCTCAGCAGACTCCACAGCACACAGGTGCCCAAAGTGAAGACTGTGCTCATTTGCAG
Seq C2 exon
CCCCGCTGGAGAAGGCTCAAGACCCCGAAAACGCTATTGTCCCTTCCGGGTACGATTCGCAGACGAGACCCTGCAGGACACAGCACTCCGGTACTGGGAACGCAACCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044320-1700001O22Rik:NR_028486:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.578 A=NA C2=0.231
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: