MmuINT0000786 @ mm10
Intron Retention
Gene
ENSMUSG00000044320 | 1700001O22Rik
Description
RIKEN cDNA 1700001O22 gene [Source:MGI Symbol;Acc:MGI:1923631]
Coordinates
chr2:30797868-30800816:-
Coord C1 exon
chr2:30800724-30800816
Coord A exon
chr2:30797981-30800723
Coord C2 exon
chr2:30797868-30797980
Length
2743 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
AAGACTGTGCTCATTTGCAGCCC
3' ss Score
6.68
Exon sequences
Seq C1 exon
GGACAAACCATTGCACTGGGACAACAATTTTAAAGAGAAGACTACCCTGGGGCTCCCAAGAGGTGAACTTGCCAGAGCCAAAAAGGCCCATCC
Seq A exon
GTGAGTAGTAGCTGTTGTGAGTACACACGTGCTATAATTTTGTAGCGTTGACTCTCTCCTCCCACCATCACGTGGGCTTGGGGGATGGAAAGGAGGTCATAGGCTTGCCTAACAATCACTTCTATCATTTCCCCAAGCCATGAGTTCTGGGAATGGGAACAGGAAGGCATTCGTTCGCTCCCTTGTTTCCAGACATTTAGTAATGGATTTACCGTGTATCTATCGATCCACTCACCTATCCATCCTTTCACGCACCTAACCCCTTACTCACAAACCAGGTCTTCTATAAGCTATTGTGAATCTCCATCCACCTAGCCATCGAAGCATCTAACTGGCCATGAACTCATAACTGCCCCCAAACTGCTGGACTGCCAGACAGCCAGTCTTTTGTTTATTCAGAAATCCCCTCTGGCTATAGCTGCCTGACAGCTATCCTTTCATTCATATAAACCCAGGATGCCAATCATCTCTCCGCTAGTAATAAAGCCACCCACACGCTTACATGGTTGTCTGCATAGCCATCCAGCTACCCAGCTGAGATCCAGACCTGAATCCACCTGCTGCTGAACTCTTCTCTCATTTAGAAGCATTACCCATGTATGAAGTTTTACTGTGTATCAGATGCTAGAGGAACAGACAATGAGAGACGGAACCAAGAAAGATCCCTGACATTAACCCACATTAATACCTGGAATTGGATGCTAAAGAGCTCTTAATGGAGAGGGGGAAGGAAACAACAGGTTTAAACAGGCTGGAGCACAAGTGCAGGGTGAAGGCCATTGTCTGGGGGGGTTAAAGACTAGAGAGTTGGGTGTGGTGGTGCACACTTTTAATCCCAGCACTCTGGAGGCTTAAGTAAGCAACTCTGTGAGTTCAAGGCCAGCCTGGTCTACATAGTGATTCCAGAACAGCCAGGGCTACAAAGTGAGACCCTGTCTCAATTAATCAATTTAAGGAAGGACCAGATGGACCAGGGAACATGCATACAGAGCAAGTGTACCATTACTGTTCCGTCTAGTAATGTCTGCTGGCAGACATTACTAATGGATCACTGCACATTTCTCTGTGAGCCTCAGAACCCTTCCTGACCCAGTTCTCTAGGATCAAAATAGAGACTTAGGAGGATGGAGAGATGCGTCAGCAGTTAAGAACACTGGCTGCTCTTTCAGAGAACCCGGGTACAGTTCCTAGCATCCACATAGCAGCTCACAGCTGTCTATAACTCCAGCTGTAGGAGATTTGACACCCTCAAACAGACCTACATGCAGACAAAACACTAAAAAAAAAATCACTAAAAAAGTGGAGCCTAGAGTTGGACACTTATGTATACATAACATTCCTTCAGTATGATAGATTGCTTCAGTGAATGATCCTCCCCAGGCAGCGAAGCATGGTGCCACTCTGTTGGGCAGGACCTAGGAGATGTCTAAGCCTCGCCCTGTTGCCAGAACAGAGCTGAGGTTCCACATGCACACAACTGTGACCCTAACTAAGCCCCAACATCTATAGTCCCGGCTGCATGGCTCTTTGGTGGACAGTGAGAAACACACCCTATGCTTCCACAAAGGTGCCCCAGGATCAGTGGGTATGGGTGTGTAAATACGTGTGGCCAAGGTGAAGAAAGTCCAATGGGGCATTTCTGAGTGATCAAGTAACCAGGCTGGCAGCCCAGCCCCTGAGGGAGAAGTGAACAGGTCTAACATTTTTATTACATACAAATATAACACACCCTTTATAGAGCACAACCCCACTGACAGGCCCTGTTCTAGGTGCCTCCCCACACGGGGTACTCCACTCTCCCAGTTCCTGTGACGGCGGAATGATCCCGCCTGTAACAGAGCACATGACCGGAAGGAGAAAAGTGACAAGTGGAACCCTGAGGACAGTGTGCCCCAGCTCACACGGCCTCAGCGGCACAATCGAGGCTGACAGCTATCGTGACAGCTCGAAACTAGAGGCGCTTCTTCCGCCCGGCATACCCTCGACAGGATGCTCTTGCAGCCCGCCCCATCTCTTCACACCTGTGCTGAGGAAGGGGTGGGGCACCATCATTTCCTTATTTTTATTTCTATCTGCTTATTTGTCAACCCGTAGCCCAGGCTGGATTCACACTCACTATGTAGCCAAGGATGGCCTTTAACTCTTGATCCTTTGGCCTCCACCTCCCAAGTGTCCCACCCGCCACACCGTGCCTGGCTTAATCTCCATCGCAGAGGAGGAGACAGGTTTCTGTGTGTCAGGACCTCTCGATGGCTCTAGCCTGCGGGCCAGACATCTCTGTGCCTCAGTCTCCTCACTTGTAATTGGGATAGTGACAGGGTTCCGTGGGCACTGCTCAGGTTTGGTGGGATAAAACATGCCACACGATGATGGAAGGAGCACTTGTGACTGGTAGAGCTCCGCCACCAACCAAAATCTGTCCAAGATTTATATTTTATTTGTGTGTGTGTGTGGGTGGGTGGGGGCAGGGTGTTCACATGAGCCCTGGTGCCTGCAGAGGCCAGAAGAAGGTGTCAGATTACCTCAGGAGTGGAAGTCACAGACAGTAAGCCAACAATGTGGGTGCTAGGACCAAATCCAGGTCCTCCTCAGGAGCACTCAGGAATGCACGCTTAAAGGCTGAGCCATCTCTCCAAGCCCTAGCTGAGATCTTACGAGGAGCCTTGTTCCCCGGCCTCTCGTTTCCCCTCAGCAGACTCCACAGCACACAGGTGCCCAAAGTGAAGACTGTGCTCATTTGCAG
Seq C2 exon
CCCCGCTGGAGAAGGCTCAAGACCCCGAAAACGCTATTGTCCCTTCCGGGTACGATTCGCAGACGAGACCCTGCAGGACACAGCACTCCGGTACTGGGAACGCAACCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044320:ENSMUST00000050003:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.578 A=NA C2=0.231
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types