HsaINT1006052 @ hg38
Intron Retention
Gene
ENSG00000179058 | C9orf50
Description
chromosome 9 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:23677]
Coordinates
chr9:129615484-129619636:-
Coord C1 exon
chr9:129619520-129619636
Coord A exon
chr9:129615648-129619519
Coord C2 exon
chr9:129615484-129615647
Length
3872 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
GCCCCTCTCCCCTCTCTCAGCAG
3' ss Score
8.49
Exon sequences
Seq C1 exon
GGGCCAGTCATCGCACCTCCAGGATAGTCTTACGAAGATTTCGCTCCAGCAGACACCTATTCTGGGGCCCCTGAAGGGTGATCACTCACAATTCACCACTGTCAGAAAGGCCAACCA
Seq A exon
GTGAGTGATGGGCGGGATAAGGGTAGGGTAGTGGAGGAAAGGGGCATTTCTTTCCTTCTTTCTTTCCTCTTTCGCCCATGAATGTATTCATTTATCCACCTATCTACCCATTCATCCATCCTTACATATGGCTGTCCGTGAATCAGATCTTCTACCAACCCATTCAAGATTCATTCGCCAGTTCATCAATGAATCAACCCATCCATTAATGAGGTCTTCTACCAACACATAATTCATCCATGAATCTATTCATATATTCATTTTCCCATTCACCCATCCATCTTTGCATCCATCTCATCCATGAACCAAGTCTTCTACAACCCGTTCATGAATCTCTCCATCTATCCATCCATCCTTCTGTCCACCCATTAATCTATCATGGACCCATGACTCCATCCATCCATACATTCACTCACCCACCCACCCATGAATCAGGTGTCCTGTGGATCCATTCATCTACCTGGCCAACCAGCTAGCCAGTCATCCATCTAAAACTCCCACACTTCGGCAGGGCACGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACGAGGTTAGGAGATTGAGACCACCCTGGATAACACGGTGAAACCCCGTCTCTACTAAAAATATACAAAAAAAAAAAAAAAAACACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGAGAGAATGGTGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATTGTGCCATTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCATCTCAAATAAAAATGAAATAAAATAAAATAAAATAAATAAAAAATAAAACTCCCACACTTCTATCCATCCATCCATTGATCCAATGACCAACCATCTACAAATCCTTCCATCCACTTGTAAACCCAGGACACTGTCCATCGCTAATCTAGTCATAAAGCCATCCACAAACCTACATACCCATCTACATAATCATCCAGCCACGCATCTGTCCATCTACCCATACATTCATAGTTCAGTTCTATTCAGACCCTTTCATTAACTCACCCATCAGTCCATCCACCCATCAACCCACCCACCCAGTCTTCCATCATTTTACCCATCCCACCATCATTTGTCCATTTCTTACTCTAACTTTTATTAGGTTTTACTATATGTTGAATATTGGGAGAAAACTAAGGGATGGAGGTAAGAGAAGAGCCTAGGAATTGGAACCTACCTGGGCCTAGACACCATAGTTTTAACAGAGGAGGAAAAGAAGACAGAAACAGTTCCTCCAGGTTAAAATTCCTCCAGGCTTAAGCAGGGGTGAAGGGTGAATGGCACTGCCCATGAGTTTAAAGACCAGGGAGAGTAAATACATCACAAACATATCATTCTTCCTCATCTCATACCCACAGCAGACAAAACTAATGGATCATATTTCCCCACTGAGCCTCAGAACCATTCCTCACACAGTACTCTAGGTAGATACTCCTGATGGATCAGGGTAGGAACTAGAAATGGAACACATGGCCAAGCATGGTGGCTCATGCCTATAATCCCAGTGCTTTGGGAGGCTGAGGCAGGAGGATCGCTTGAGCCCAGGAGTTTGAGACCAGCCTTGGTAACATGGTGAAACCCTGTCTCTACAAAAATTACAAAAATTAGCTGGGCGTGGTGGTGCATGCCTGTGGTTCCAGCTACTCGGGAGGCTGAGGTGGGAGGATTGCTTGAGCCTGGGAGGTTGAGGCTGCAGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACCCTGTCTCAAAAAACAAACAAACAAACAAAAACAGTGAAACACATTTACCAACCTCAGAACGTTCAACCAATCAGGCCAAATATACACATGACTTCTCACAAGATACAAATAAATAAAAGTATGGAATTCATTCTCTCAAATGTGAGCAAAAGCAGAGACAAACACAGTTACAGACTTTCACATTCAAGAGCAAATACTTGAGCACCTTACTGTGTGTGAGATTCCCTGGTAGGCCCTGCAGGGGACACTGTGGTGCCTCAGAACAGGCTCCAGTGGCCCTCGAGTGAAGATGCTGAGATTTCAGGCAGGTGGGCAGAGCTGGGTTATGCCTTTGCCTGGCCCAGCAGCCAGCAGAGAGCAGGGGTTCCTGAGCAGACAACTGTTAGATGACTAGGTCCCAAGGCATGTAGCCAGGCACTGTCCTGACACCTCCCAACTGCTTGGCTCTTTGGAGGCTGATGAAAAGCATTCCCTCTGCATCTACACAGACATACAGATGTGGTCAGATGAATGGATGCAGACATATAACTATGTGCATACTAACGGTCAGCCATGACCTTCCTCCATAACAGAGTTATAGGTGGGTCAAGCAGGCCTTCCCGCAGCCTTGCCCTTGAGGCTGATTTTTTTTTTCTTTTTTTTTGAGACGAAGTCTCACTCCGTCCCTAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAACCTCTACCTCCTGGGTTCAAGTGATTCTCAACCTCTCGAGTAACTGGAACTACAGGCGCACGCCACCGTGCCCAGCTAATTTTTTTGTATTTTTGGTAGAGACGGGGGTTTCACCATGTTGGCCAGGATGGTCTGGATCTCTTGACCTTTTGATCTGCCTGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACACCGGGTTGAGGCTGAAATTAATAACAATAAATGGAACAATGTTATCTATGAAATATACATATAACAGATACCCTTGATTAAGGCCAAACCCTGTGCCAGGCCACGTCCTACATGCCTCATGTAAATCATTTGATACTCACCAAACCCAGGAGGATGGTATTATTGTGCCTATAATTTAAAGGGAAAAAAACCTGCAGAATGGAGACTTGGAGACAGTCTACCAAAGGCCACGTGGCTGGGATGGGGCATGATTGAGATAGACAGTTACAATAAGAACAGCTCAGGCAGGCGGGCGGGCGGTGGCTCATGCCTGTGATCCCAGCACTTAGGAAGGCGAAGGGGGGTGGATCACTTGAGGTCAGGCGTTCGGGACCACCCTGGCCAATAAGGTGAAACCCCGTTTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCACACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAATGAGCCGAGATGGCACCACTGCACTCCAGCCTGAGCCACAGAGCGAGAATCTGTCTCAAAAACAAAACAAAAACAAAAAACAGCTCCCTGTTAGTGATGTTTCCTCTGGGTCCTGCAGACCCTGGGCTGGATGCTTGTACGGCCCATTTCCTTTCTTCACAACCCTGTAGGGTGGGCACAATGATTCCCATTTTACAGACAAGAAAACTGAGGCTCAAAAGGGTCAGGAATGAAACCCAGGACTGCATGACTCCTGGGCTGGCATTCTTATTCTCTCTGCTAAATTGCTTTACGTGCGAGGGCGCCAGCTCTGGAACCAGGATGCAGGTCTTGGCTCCATGCCTGACAGCTGCATCGCCTTGGAATAGTCTCTGTGCCTCTGTTTCCTCAACTATAAAATGAGAATGATAACAGCGTTTCATGGGGACTGTGTGCATTTGGTGGGTTGGTGTATGTGCGTGCTTGAGCCTGCCTGGCAGGTAGGAAGTGCTCCGTTAAGGCCGGCTGCTGTGATTGGCGTTATCCATTCTTCAAGACCAGTGTAGGGCACTTGTCCAGGATCTCACAGCGAGTCTGGGGCTGGTGCGTGTGTGCTGGGGTACGGTGGGGGGCTTCGAGCACAGGCCCCTCTCCCCTCTCTCAG
Seq C2 exon
CAGGCCCCACGGTGCACAGGTCCCCAGGCTCAAGGCTGCGCTGACCCACAACCCCTCGGGGGAAGGCTCTAGGCCCTGCAGGCAGCGTTGCCCTTTCCGGGTGCGATTCGCTGACGAGACCCTGCAGGACACAACGCTCCGCTACTGGGAGCGCAGACGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179058:ENST00000372478:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.455
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains