BtaINT0029751 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019513 | C9orf50
Description
chromosome 9 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:23677]
Coordinates
chr11:100033482-100036651:-
Coord C1 exon
chr11:100036538-100036651
Coord A exon
chr11:100033646-100036537
Coord C2 exon
chr11:100033482-100033645
Length
2892 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
GAGCCTCTCATCTCTCTCACCAG
3' ss Score
-2.91
Exon sequences
Seq C1 exon
GGGCCAATCATCCTACCTCAAGAATAGCCTTAAGAAGATTTTGCTTCATCAGATACCTGCCCTGGGGCCCTTGAGTAGAGATTACCCGCAGTTCACCACGGTCAAGGCCAATCA
Seq A exon
GTGAGTTGTGGGAGGATGGGGGCAGGGGGGTGGGGAGAAAGAACATTTCTTTCCTTCCTCTGTCTTTCCAGAATTTATCCATCTGTCCACCTGTTTATCCATCTGTATGTCCATCCATGAATCAAGTCTTCTCCCAACCTGTTTAAGGGTCATCCATCAACATCTATGAATCCATCCACCCATTCATTAATCAGGTCTTTTACACACATTCATAATTCACTGATGAATCCATTCATATAATCATTCTCCTATTCACCCATCCACCATTGCATACATCTGTGAACCAGGTCTTTCACAATCTATTCACGAATCTCTCCATCCATCCATCCACTCATGAATCAGGTCTCCTGTTGATTCATTAATCCATCTCTCCAGCCAGCCAGCCAGCCAGCTACTCACAAACTCCCACAATTCTATCCACCTATCCATGAAGTCAATGATTGATCATCTACCAATCCTTCCATCCACTTGTAAATCCAGGATACTATCCATCACTAATCTAATCATGAAGCCAGTCTATATACCCACCTGCATAATCATTCATCCACCCATGTATCCATACATCTACTTATCCTCCTAAGATCCAAACCTTATATTAAGACCTTTGTGGGAGTTCCCTGGCAGTCCAGTGGTTAGGACTCAATGCTTTCACTTCTGTGGCCTGGATTCTACCCCTGGTTGGGGAACTAAGGTCCTCCAAGCCAAGTGGTGTGCCAAATAAAAAAGACCTTTTCACTATTTCATCCATCAGTCCATCCACCCACCCACCCACCAACCCATTCTTTCACCCACCTGCCATTCATTCATCCATCTCTTCCTCTAACTTTGATTCACTTTTACTATATGTCAATGGAGAAAGTGAAGTCGCTCAGTCGTGTCTCTTTGCAACCCTGTGGACTGTAGCCCACCAGGTTCCTCCGTCCAGGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAGGGGATTGTCCCAACCCAGGGATTGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGTATTCTTGCCTGGAAAATTCCATGGACAGAGGAGCCTGGTGGGCTACAGGCCGTGCGGTCACAGAGAGCCGGCCATGACTGAGTGTCTGAGCACAGCACATATGTCAAATATTGGAGGGAATAAAATAAGGATGGAAGTAGGAAGAGCCCGGGCACTAGCACTTAGCTGGACCTGGATGCAGTAGCTCTAAGGGAGGGAGAAAATAATGCAGAAGTAGTTCCCCCTGCTTAACCGTGGATGAAAGGTGAAGAGCATCGTCCTTGAGTTTAAAGACCGGGACAGTACATACACCAGACACGCCATTCCTTCTCATCCTGGGCCCATGGCAGACATTGCTAATTGAGCACAGCACTTTCCCCCACTGAGCCTCAGAACCCTTCTTGACTCAGTGCTCTAGGAAGACACCGCCTGTGGATACGCACCACCGTTGCGTAACTAGGTCCCAGTGCATGTAGCCGACTCTGTCTTGGTCATCTCCTGGCTCCCGGACTCTTTAAGGGACTCATGAAAAGTGTCCTCTCTGTGTCCACATGGACATAAAGATGTGGTCAGATAAATGGAGACAGGTATAGCCATAGGCATGTACTTAAGATCGAACATGGCATTTCTGAATAACAGAGCCATTGATGGATCAAGCACACCATCCTGCAGCCTTGCTCTGGTGGCTGAAATGAATAACAATAAATGTAATAATCACAGATCCCCTTTACTGAGCCCAGGCCCCTGGCCAGGCTCCAAACTAGATGCCTCACATTTTATCTGATACTCAACAAACTCTTAGCGCACTTCTAGGGGGGATGTTAGTGTAAAGAAGCTGCCTATCAATGCAGTTAGACAAAAAAGATGTGTTTGATCCCTGGGTCAGGAAGATCCCCTGGAGAAGGGCACAACAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTAGCGGACTATAGTTCATAGGGTCGCAAAAGAGTCTGACATGACTGAAGAGACTTAGCACATACTCATGCAAACTCTTATAAGGATGTTGTTATCCTGCCCACAACACATAGTACATAATTTAAAGGGGAAATCTGCTGGTGGTCTGCCCAATGTCACAGGACTGGGATGGTTCATAGTTGAAATTGATGACTATGAGGAACAGTTCTCAGAGATGTTTACCCTTGGCCCTGCAGACCCTGGGGGTGTGGGGGGTGCTTTGCAGTCTCTTTCACGTCTTCCCGGCCCTGTACTGTGGGCATGATGATCCCATTTTACAGACAAAGAAACTGAGGCTCCAAGAGTTAGAATTGAAACCCAGGGACCGCCCAACTCCTGAGTTCATATCCTTCTTCTCTCTGCTAAATTGCTTGATATACAAGATTGCCTGCTCTTGAACCAGGATTCATAGCCCAGTCCCACCCCTAACCAGCTGTGCGATCTTGGGCAAATTGGGGGGAAAAAAAATCAAAAAACCTCTGTGCCTCAGTTTCCTCATCAGTAAAATGAGACTAATAATCGTGTTTCACAGGGTTGTGTGGGTTTGGTGGGCTGATGCCTGTTACGTGCTTGATCCATTGCTTTGAGGGGCAGGAAGTGCTCAGGAGGGACCTGCTCTGATGGTCAGGATCCCACAGAGAGCTCTGGTGGACGTGTGTTGCCGGGGTGGCATGCCGGGGAGGCTGGTGGCTGAGCCTCTCATCTCTCTCAC
Seq C2 exon
CAGGCCCCAGGCTACACAGGCCCCCAAGCTCAAGGCTGTGCTCACCCACAACTCCTCGGGGGAAGGCTCAGGGCACCGCAGGCGATGTTGCCCTTTCCGAGTGCGATTCGCTGACGAGACGCTGAGGGACACAGCACTCCGTTACTGGGAACGCAGCTGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019513:ENSBTAT00000025995:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=NA C2=0.335
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development