MmuEX0000332 @ mm10
Exon Skipping
Gene
ENSMUSG00000044320 | 1700001O22Rik
Description
RIKEN cDNA 1700001O22 gene [Source:MGI Symbol;Acc:MGI:1923631]
Coordinates
chr2:30797868-30800816:-
Coord C1 exon
chr2:30800724-30800816
Coord A exon
chr2:30798687-30798954
Coord C2 exon
chr2:30797868-30797980
Length
268 bp
Sequences
Splice sites
3' ss Seq
ACTGACAGGCCCTGTTCTAGGTG
3' ss Score
4.29
5' ss Seq
GGGGTGGGG
5' ss Score
-0.14
Exon sequences
Seq C1 exon
GGACAAACCATTGCACTGGGACAACAATTTTAAAGAGAAGACTACCCTGGGGCTCCCAAGAGGTGAACTTGCCAGAGCCAAAAAGGCCCATCC
Seq A exon
GTGCCTCCCCACACGGGGTACTCCACTCTCCCAGTTCCTGTGACGGCGGAATGATCCCGCCTGTAACAGAGCACATGACCGGAAGGAGAAAAGTGACAAGTGGAACCCTGAGGACAGTGTGCCCCAGCTCACACGGCCTCAGCGGCACAATCGAGGCTGACAGCTATCGTGACAGCTCGAAACTAGAGGCGCTTCTTCCGCCCGGCATACCCTCGACAGGATGCTCTTGCAGCCCGCCCCATCTCTTCACACCTGTGCTGAGGAAGGG
Seq C2 exon
CCCCGCTGGAGAAGGCTCAAGACCCCGAAAACGCTATTGTCCCTTCCGGGTACGATTCGCAGACGAGACCCTGCAGGACACAGCACTCCGGTACTGGGAACGCAACCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044320_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.578 A=0.214 C2=0.231
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000050003fB37
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAAACCATTGCACTGGGA
R:
GCACGGTTGCGTTCCCAG
Band lengths:
204-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types