RnoEX0072484 @ rn6
Exon Skipping
Gene
ENSRNOG00000018486 | RGD1311084
Description
similar to 1700113K14Rik protein [Source:RGD Symbol;Acc:1311084]
Coordinates
chr3:9632128-9635211:-
Coord C1 exon
chr3:9635119-9635211
Coord A exon
chr3:9633002-9633273
Coord C2 exon
chr3:9632128-9632240
Length
272 bp
Sequences
Splice sites
3' ss Seq
ATTGACAGGCCCTGTTCTAGGTG
3' ss Score
3.47
5' ss Seq
GGGGTGGGG
5' ss Score
-0.14
Exon sequences
Seq C1 exon
GGACCAACCATTGAACTGGGACGACAGTTTTAGAGAGAAGACTACCCTGGGGCTCCCAAAAGGTGAATTCGTCAGAGCCAAAAAGGCCCATCC
Seq A exon
GTGCCTCCCCACACGGGGTACTCCACTCTCCCAGTTCCTGTGACTGACGGCGGAATGATCCCGCCTATAACACAGCACATGACCGGAAGGAGAAAAGTGAGAAGTGGAACCTTGATGACAGTGTGCCCCAGCTCATACGGCCTCGGTGGCACAATCGAGACTGACAGCTATCGTAACAGCTCGAAGCTAGAGATGTTTCTTCCGTCCGGCATACCTTCCACAGGATGTTCTTGCAGTTCGCCCCATCTCTTCACACCCGTGCTGAGGAAGGG
Seq C2 exon
CCCCTCTGGAGAAGGCTCAAGACCCCGCAGACGGTATTGTCCTTTCCGGGTGCGATTCGCAGACGAGACCTTGCAGGATACAGCACTCCGGTACTGGGAACGTAACCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018486_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=0.000 C2=0.231
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000024953fB11844
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCAACCATTGAACTGGGA
R:
GCCCGGTTACGTTCCCAGTA
Band lengths:
204-476
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]